Supplementary Data for Codlin et al. Novel avian protein sequences improve resolution of palaeoproteomic approaches to taxonomic identification and reveal widespread intra-species variability

Supplementary Data for Codlin et al. Novel avian protein sequences improve resolution of palaeoproteomic approaches to taxonomic identification and reveal widespread intra-species variability. These files include final curated sequences for 13 proteins from annotation of 160 Anatidae genomes, reference proteins used in annotation pipeline, outputs of mapping SRAs for Anas platyrhynchos to a OC116 gene and Anser indicus to a COL1a2 gene, code to reproduce figures, as well as other files mentioned in the manuscript. See "List of supplementary files" for details of the files in this repository. Note "demo.zip" includes a copy of GCF_015476345.1 Anas platyrhynchos genome assembly ZJU1.0 - NCBI - NLM downloaded from NCBI 21/05/2025.Codlin等人的补充数据集：新型鸟类蛋白质序列可提升分类鉴定古蛋白质组学方法的分辨率，并揭示广泛存在的种内变异。本数据集包含以下内容：基于160个鸭科（Anatidae）基因组注释得到的13种蛋白质的最终整理精选序列、基因组注释流程中使用的参考蛋白质、将绿头鸭（Anas platyrhynchos）的序列读取存档（SRA）比对至OC116基因，以及将鸿雁（Anser indicus）的SRA比对至COL1a2基因的输出结果、可复现论文图表的代码，以及论文中提及的其他文件。详见本数据集仓库中的"补充文件列表"以了解各文件详情。 注意："demo.zip"包含2025年5月21日从NCBI下载的绿头鸭（Anas platyrhynchos）基因组组装版本ZJU1.0（登录号GCF_015476345.1）的副本，该资源由NCBI-NLM发布。