Data from: Genome assembly of Danaus chrysippus and comparison with the Monarch Danaus plexippus

<strong>GENOME ASSEMBLY DATA</strong> <strong>Dchry2_unaltered.fa.gz</strong><br> Unaltered version of Dchry2 before manual edits <strong>Dchry2.haplotigs.fasta.gz</strong><br> Haplotypic contigs removed in the Purge_haplotigs step <strong>Dchry2_to_Dchry2.2_transfers.txt</strong><br> Edits of the Dchry2 assembly to produce Dchry2.2 (contig breaks, reverse complements and name changes). Columns are: new contig name, new contig start, new contig end, original contig name, original contig start, original contig end, orientation. New contig numbers indicate the chromosome they correspond to. <strong>mxv1.200520.ragoo.rnm.fa.gz</strong><br> Fasta file from of MEX_DaPlex assembly with mxdp_ fasta headers <br> <strong>GENE AND REPEAT ANNOTATION</strong> <strong>danaus_plex_mex_braker_a002.sequences.tidy.gff3.gz</strong><br> Sorted and tidied gff3 from MEX_DaPlex re-annotation <strong>danaus_plexv4_braker_a006.sequences.tidy.gff3.gz</strong><br> Sorted and tidied gff3 from Dplex_v4 re-annotation <strong>mxv1.200520.ragoo.rnm.wDpv3.gff3.gz</strong><br> gff3 file from Cei of MEX_DaPlex annotation <strong>dplex2_uniprot-proteome_UP000596680_and_dplex_mex.fasta.gz</strong><br> Protein set used for annotation of all three assemblies <strong>functional_annotation_output.tar.gz</strong><br> all output from pannzer2 regarding functinal annotation of the Dchry2.2 genome <strong>Lepidoptera_and_danaus_chrysippus2.2.repeatmasker.gz</strong><br> Custom repeat library (combination of lepidoptera and specific dchry2.2 library)<strong>基因组组装数据（GENOME ASSEMBLY DATA）</strong> <strong>Dchry2_unaltered.fa.gz</strong><br> 未经过人工编辑的Dchry2原始版本（FASTA格式压缩文件） <strong>Dchry2.haplotigs.fasta.gz</strong><br> 经Purge_haplotigs流程移除的单倍型重叠群（contig）FASTA格式压缩文件 <strong>Dchry2_to_Dchry2.2_transfers.txt</strong><br> 用于将Dchry2基因组组装编辑为Dchry2.2版本的操作记录，涵盖重叠群断裂、反向互补序列修正及名称变更等操作。该文件各列依次为：新重叠群名称、新重叠群起始位置、新重叠群终止位置、原始重叠群名称、原始重叠群起始位置、原始重叠群终止位置、序列方向。新重叠群编号对应其所属染色体。 <strong>mxv1.200520.ragoo.rnm.fa.gz</strong><br> 带有mxdp_序列头部的MEX_DaPlex组装结果FASTA格式压缩文件 <br> <strong>基因与重复序列注释（GENE AND REPEAT ANNOTATION）</strong> <strong>danaus_plex_mex_braker_a002.sequences.tidy.gff3.gz</strong><br> 经整理排序后的MEX_DaPlex重注释结果GFF3格式压缩文件（GFF3） <strong>danaus_plexv4_braker_a006.sequences.tidy.gff3.gz</strong><br> 经整理排序后的Dplex_v4重注释结果GFF3格式压缩文件 <strong>mxv1.200520.ragoo.rnm.wDpv3.gff3.gz</strong><br> MEX_DaPlex注释中Cei流程产出的GFF3格式压缩文件 <strong>dplex2_uniprot-proteome_UP000596680_and_dplex_mex.fasta.gz</strong><br> 用于全部三个基因组组装注释的蛋白质序列集FASTA格式压缩文件 <strong>functional_annotation_output.tar.gz</strong><br> PANNZER2针对Dchry2.2基因组进行功能注释的全部输出结果压缩包 <strong>Lepidoptera_and_danaus_chrysippus2.2.repeatmasker.gz</strong><br> 自定义重复序列库（结合鳞翅目（Lepidoptera）特异性序列与Dchry2.2专属序列库），为RepeatMasker(RepeatMasker)输入文件压缩包