Additional file 2 of In search of the Aplysia immunome: an in silico study

Additional file 2: Supplemental File SFile2. OrthoFinder Results. OrthoFinder Results. First page contains the overall statistics from OrthoFinder about orthogroups. The second page contains pairwise ortholog counts among species surveyed. Page three contains per species statistics. The remaining pages contain orthologs and ortholog families (orthogroups) identified by OrthoFinder using reference proteomes for Aplysia, Crassostrea gigas (GCA_000297895.1_oyster_v9_protein.faa), and Biomphalaria glabrata (GCF_000457365.1_ASM45736v1_protein_Bglabrata.faa) from the RefSeq database, and reference proteomes for Homo sapiens (UP000005640_9606_Homo_Sapies) and Drosophila melanogaster (UP000000803_7227_DroMel). Each page labeled is labeled with the accession number and organism name for each organism. The last page is a complete collection of all proteins assigned to all computed orthogroups. The complete output of OrthoFinder including gene trees are available from the author upon request.

附加文件2：补充文件SFile2。OrthoFinder分析结果。第一页包含OrthoFinder输出的直系同源基因簇（orthogroup）整体统计信息；第二页收录所调研物种间的成对直系同源基因计数数据；第三页包含各物种的单独统计结果。剩余页面则收录了OrthoFinder基于RefSeq参考序列数据库中的参考蛋白质组所鉴定得到的直系同源基因与直系同源基因家族（直系同源基因簇）：所用参考蛋白质组对应物种包括海兔（Aplysia）、长牡蛎（Crassostrea gigas，GCA_000297895.1_oyster_v9_protein.faa）、光滑双脐螺（Biomphalaria glabrata，GCF_000457365.1_ASM45736v1_protein_Bglabrata.faa）、智人（Homo sapiens，UP000005640_9606_Homo_Sapies）以及黑腹果蝇（Drosophila melanogaster，UP000000803_7227_DroMel）。所有页面均以对应物种的登录号与物种名称进行标注。最后一页包含所有被分配至各计算所得直系同源基因簇的蛋白质的完整集合。OrthoFinder的完整输出结果（含基因树）可向作者申请获取。