Additional file 5 of Genome-wide analysis of wheat DNA-binding with one finger (Dof) transcription factor genes: evolutionary characteristics and diverse abiotic stress responses

Additional file 5: Table S1. The nomenclature, characteristics of Dof genes and their deduced proteins in Arabidopsis thaliana and Oryza sativa subsp. japonica. The data (accession numbers and amino acid sequences) of Dof transcription factor for Arabidopsis and rice are obtained from the Plant Transcription Factor Database (http://planttfdb.cbi.pku.edu.cn/family.php?sp=Ath&fam=Dof; http://planttfdb.cbi.pku.edu.cn/family.php?sp=Osj&fam=Dof). Table S2. The nomenclature, characteristics of Dof genes and their deduced proteins in Triticum aestivum L. The accession numbers and sequences (genomic, amino acid, and CDS sequences) of the 96 wheat Dof genes were obtained from Triticum aestivum genome data (IWGSC) in Ensemble Plants (http://plants.ensembl.org/Triticum_aestivum/Info/Index). Table S3. Coevolution sites in TaDofs. Table S4. Cis-element analysis of 1500 bp nucleotide sequences data upstream of the translation initiation codon of TaDof genes. Table S5. The number of each cis-acting element contained in the subfamily. Table S6. The RNA-Seq atlas data of the TaDof genes. Table S7. Primers used for qRT-PCR of Dof genes in wheat. Table S8. The relative expression values in qRT-PCR and RNA-Seq atlas data of TaDofs under abiotic stresses. (A) The relative expression values of TaDofs in qRT-PCR under abiotic stresses. (B) The RNA-Seq atlas data of TaDofs under abiotic stresses.

补充文件5：附表S1。拟南芥（Arabidopsis thaliana）和粳稻（Oryza sativa subsp. japonica）中Dof基因及其推定蛋白的命名规则与特征。拟南芥与水稻的Dof转录因子（Dof transcription factor）相关数据（登录号与氨基酸序列）获取自植物转录因子数据库（Plant Transcription Factor Database，http://planttfdb.cbi.pku.edu.cn/family.php?sp=Ath&fam=Dof; http://planttfdb.cbi.pku.edu.cn/family.php?sp=Osj&fam=Dof）。附表S2：普通小麦（Triticum aestivum L.）中Dof基因及其推定蛋白的命名规则与特征。96个小麦Dof基因的登录号及序列（基因组序列、氨基酸序列与CDS序列）获取自Ensembl Plants数据库中的普通小麦基因组数据（IWGSC，http://plants.ensembl.org/Triticum_aestivum/Info/Index）。附表S3：TaDofs的共进化位点。附表S4：TaDof基因翻译起始密码子上游1500 bp核苷酸序列的顺式作用元件（cis-element）分析。附表S5：各亚家族所含顺式作用元件的数量。附表S6：TaDof基因的RNA测序（RNA-Seq）表达谱数据。附表S7：小麦Dof基因定量实时聚合酶链式反应（qRT-PCR）所用引物。附表S8：非生物胁迫下TaDofs的定量实时聚合酶链式反应相对表达量及RNA测序表达谱数据。其中(A)为非生物胁迫下TaDofs的定量实时聚合酶链式反应相对表达量，(B)为非生物胁迫下TaDofs的RNA测序表达谱数据。