Genomes, repeat annotation and Kimura distance for eight termite genomes
收藏资源简介:
Genomes, repeat annotation and Kimura distance for individual repeats for the submitted work (https://www.biorxiv.org/content/10.1101/2023.10.31.564968v2). Termite_genomes.zip: Haploid genome assemblies used in this work. It includes mitochondrial genomes and potential haplotypic duplication. For Trin, the genome has been processed with purge_dup. termite_RMout.zip: Repeatmasker annotation for the provided genomes. One can find the repeat library in https://github.com/BitaoQiu/termites_TE_methylation. KD_values.zip: Kimura distance for individual repeats. Extracted from the output of RepeatMasker
本研究配套的基因组、重复序列注释及单个重复序列木村距离(Kimura distance)数据集,对应预印本论文https://www.biorxiv.org/content/10.1101/2023.10.31.564968v2。 Termite_genomes.zip:本研究使用的单倍体基因组组装结果,包含线粒体基因组及潜在单倍型重复区域。其中Trin基因组已通过purge_dup工具完成处理。 termite_RMout.zip:对应上述基因组的RepeatMasker(重复序列掩膜工具)注释结果。该研究所用重复序列文库可从https://github.com/BitaoQiu/termites_TE_methylation获取。 KD_values.zip:单个重复序列的木村距离数据,提取自RepeatMasker的输出结果。



