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Genomic data of Nanmaohu Park vascular plant specimen, RL0637

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DataCite Commons2025-05-26 更新2025-04-15 收录
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http://gigadb.org/dataset/101700
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002194. Preliminary identification is that it is of the family Zeuxine strateumatica. <br>The K-mer distribution of the sequencing predicted the genome size to be Not recordedbp. We have generated 52720000000bp of data, which gives a theoretical coverage of x.

本研究于中国云南省瑞丽植物园采集维管植物样本。所有样本的采集区域地理坐标为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔范围介于740米至1200米(以海平面为高程基准)。本次共收集1093份维管植物样本,以幼叶作为测序材料,同时同步制作凭证标本。所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。其中760份标本的DNA满足测序要求,剩余333份样本均已完成凭证标本制作,对应植物的图像已收录于本数据集。上述760份样本分属48个目、135个科,共计约696种维管植物。目前研究团队仍在推进所有标本的正式分类鉴定工作,但在本论文发表时,仅极少数标本可鉴定至科以上分类阶元。本数据集包含凭证标本编号为HCNGB:RUILI:HCNGB_00002194的植物的基因组数据与图像信息。经初步鉴定,该物种隶属于细叶线柱兰(Zeuxine strateumatica)类群。基于测序得到的K-mer分布分析,预估该物种的基因组大小为未记录(Not recorded)bp。本次共生成52720000000bp的测序数据,理论覆盖度为x。
提供机构:
GigaScience Database
创建时间:
2019-01-24
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