Car_mel_100+amino_acids_ORFs_from_1200bp+_contigs_to_Takifugu_unique_hits
收藏DataONE2014-01-14 更新2024-06-27 收录
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资源简介:
Gene list of only unique hit descriptors for potential open reading frames (ORFs) >=100 amino acids extracted from nucleotide contigs >=1,200 bp assembled from 133,681,136 100 bp pair end (PE) reads from an Illumina HiSeq 2000 using Ray v2.0.0 for Caranx melampygus. Subject database (DB) was the protein list from the fully sequenced genome of Takifugu available from NCBI. This file is filtered to only contain hits with bit scores >=80.
本数据集为针对黑纹鲹(Caranx melampygus)构建的基因列表,仅收录潜在开放阅读框(open reading frames, ORFs)的唯一比对命中描述符信息。这些潜在开放阅读框提取自使用Ray v2.0.0软件、基于Illumina HiSeq 2000测序平台产出的133,681,136条100 bp双端(pair end, PE)读段组装得到的≥1200 bp核苷酸重叠群(nucleotide contigs),且自身长度均≥100个氨基酸。本次分析所用的靶数据库(subject database, DB)为NCBI公开的、已完成全基因组测序的东方鲀属(Takifugu)蛋白序列列表。本文件已完成过滤,仅保留比对得分(bit score)≥80的比对命中结果(hits)。
创建时间:
2014-01-14



