Data from: Which frugivory‐related traits facilitated historical long‐distance dispersal in the custard apple family (Annonaceae)?

Functional trait data and GenBank sequences for AnnonaceaeThis file contains all of the data recorded in the PROTEUS database to produce the NEXUS trait matrix, including: PrimaryCharacters; PrimaryCharacterstates; References; PrimaryDataMatrix; Matrix for analysis; Updated taxonomy; GenBank sequences.Onstein_et_al_Appendix S1.xlsxAnnonaceae maximum clade credibility (MCC) phylogenetic treeWe reconstructed and dated the Annonaceae phylogenetic tree in BEAST 1.8.2. We used the uncorrelated lognormal clock model and a Yule birth prior. Substitution rates of markers were linked, and we used the GTR + gamma + invariant sites substitution rate model. To date the Annonaceae, we used the fossils Endressinia (most-recent common ancestor of Magnoliaceae and Annonaceae; 113 Ma) for the split between Magnoliaceae and Annonaceae, and Futabanthus (89 Ma) for the Annonaceae crown node (for more details, see Appendix S2). Please note that some of the taxonomic names have been changed (can be found in Appendix S1 [= Dryad file "Functional trait data and GenBank sequences in Annonaceae"]) and should be updated in future use of this datafile. In case you need 100 trees from the posterior distribution, please write to Renske Onstein ([e-mail]).MCC_treescombineAnnonaceae Supermatrix AlignmentWe sampled 234 Annonaceae species (c. 10% of total) representing 105 (c. 97% of total) genera and all four subfamilies, and seven outgroup taxa from related families. For these species, we generated a molecular supermatrix of eight plastid markers as assembled by Chatrou et al. (2012) supplemented with 157 additional sequences for 37 species. For details on the methods, see Chatrou et al. (2012), GenBank numbers for the new sequences are provided in Appendix S1 (= Dryad file "Functional trait data and GenBank sequences in Annonaceae"). Please note that in the meantime some of the taxonomic names have changed (can also be found in Appendix S1) and should be updated in future use of this datafile.Annonaceae_Supermatrix_MP_3.02_forBEAST.nex

番荔枝科（Annonaceae）功能性状数据及GenBank序列
本文件包含PROTEUS数据库中用于生成NEXUS格式性状矩阵（NEXUS）的全部记录数据，涵盖：主性状（PrimaryCharacters）、主性状状态（PrimaryCharacterstates）、参考文献、主数据矩阵、分析用矩阵、更新后的分类学信息以及GenBank序列（GenBank）。文件名为Onstein_et_al_Appendix S1.xlsx。

番荔枝科最大类群置信度（maximum clade credibility, MCC）系统发育树
本研究基于BEAST 1.8.2软件重构并定年番荔枝科系统发育树：采用无相关对数正态钟形模型（uncorrelated lognormal clock model）与Yule出生先验（Yule birth prior），标记序列的替换速率相互关联，并使用GTR+Γ+不变位点替换模型（GTR + gamma + invariant sites substitution rate model）。定年过程中，以化石Endressinia（木兰科（Magnoliaceae）与番荔枝科的最近共同祖先，113百万年（Ma））校准木兰科与番荔枝科的分化时间，以Futabanthus（89百万年（Ma））校准番荔枝科冠群节点时间（详细方法参见附录S2）。请注意，部分分类学名称已发生变更（变更信息可参见附录S1，即Dryad数据集"Functional trait data and GenBank sequences in Annonaceae"），在后续使用本数据集时需完成名称更新。若需获取后验分布中的100棵系统发育树，请致信Renske Onstein（邮箱：[e-mail]）。

MCC树合并数据集 番荔枝科超级矩阵比对
本研究共采样234种番荔枝科植物（约占总物种数的10%），涵盖105个属（约占总属数的97%）以及全部4个亚科，同时纳入7个来自近缘科的外类群类群（outgroup taxa）。针对该采样类群，本研究构建了由Chatrou等人（2012年）组装的8个质体标记（plastid markers）组成的分子超级矩阵（molecular supermatrix），并补充了37个物种的157条额外序列。方法细节参见Chatrou等人（2012年）的研究；新序列的GenBank登录号可参见附录S1（即Dryad数据集"Functional trait data and GenBank sequences in Annonaceae"）。请注意，在此期间部分分类学名称已发生变更（变更信息同样可参见附录S1），后续使用本数据集时需完成名称更新。

Annonaceae_Supermatrix_MP_3.02_forBEAST.nex