Morphometric data from: Incongruent molecular and morphological variation in the crab spider Synema globosum (Araneae: Thomisidae) in Europe
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Here we provide the complete set of files used by Urfer et al. (2021, see References section below for the complete citation of the publication) for the morphometric and the molecular analysis. In particular, we provide the following documents: <br> PART 1: MORPHOMETRIC ANALYSIS - 1_Synema_data_multiple_imputation_mice.R: R-script used for replacing NAs. - 1_Synema_data_NA_imputed.csv: Dataset with raw values (in millimeters) of all 28 specimens used for the morphometric analysis. Each specimen was measured 4 times. NAs replaced using the R-script "Synema_multiple_imputation_mice.R" above. This is the datafile used for all morphometric analyses. - 1_Synema_data_with_NA.csv: Dataset with raw values (in millimeters) of all 28 specimens. Each specimen was measured 4 times. NAs not replaced.<br> <br> - 1_Synema_Reliability.R: R-script for calculating reliability.<br> <br> - 1_Synema_Reliability_supplementary_figure.pdf: Results of reliability analysis presented in a bar plot. - 1_Synema_Reliability_supplementary_table.txt: Results of reliability analysis presented in a table.<br> <br> - 1_Synema_Shape_PCA_and_PCA_Ratio_Spectrum.R: R-script for calculating the shape PCA and the PCA Ratio Spectrum of the first shape PC. You may get the necessary MRA source script from http://doi.org/10.5281/zenodo.4250142<br> <br> - Synema_globosum_AR9379_PV.jpg, Synema_globosum_AR9379_PV.jpg, Synema_globosum_AR9379_PV.jpg, etc.: Photographs taken with a LEICA M205 C stere-omicroscope. 1. Numbers after AR_ refer to the inventory number of the specimens in the Natural History Musuem Bern (NMBE). The specimen number was also used in the data file.<br> 2. The photo named "Synema_globosum_AR9163_with_measurements" shows the position of the measurements. Otherwise, the measurements are not indicated in the raw photos. <br> Example image Character name Definition<br> Synema_globosum_AR9163_with_measurements cym.l Cymbium lenght Distance of the anterior margin to the tip of the cymbium<br> Synema_globosum_AR9163_with_measurements cym.b Cymbium breadth widest breadth of the cymbium<br> Synema_globosum_AR9163_with_measurements bul.b Bulb breadth widest breadth of the genital bulbus<br> Synema_globosum_AR9163_with_measurements tib.b Tibia breadth breadth of the tibia base at the patella joint
本数据集提供了Urfer等人(2021年,完整引文见下文参考文献部分)用于形态计量学与分子分析的全部配套文件。具体而言,本次提供的文件如下: 第一部分:形态计量学分析 - 1_Synema_data_multiple_imputation_mice.R:用于填补缺失值(NA)的R脚本。 - 1_Synema_data_NA_imputed.csv:用于形态计量学分析的全部28份标本的原始测量数据集(单位:毫米)。每份标本均进行4次重复测量,缺失值已通过上述1_Synema_multiple_imputation_mice.R脚本完成填补,为本研究所有形态计量学分析的核心数据文件。 - 1_Synema_data_with_NA.csv:全部28份标本的原始测量数据集(单位:毫米),每份标本均进行4次重复测量,保留原始缺失值(未进行填补)。 - 1_Synema_Reliability.R:用于计算可靠性指标的R脚本。 - 1_Synema_Reliability_supplementary_figure.pdf:以柱状图呈现的可靠性分析结果(补充图表)。 - 1_Synema_Reliability_supplementary_table.txt:以表格形式呈现的可靠性分析结果(补充表格)。 - 1_Synema_Shape_PCA_and_PCA_Ratio_Spectrum.R:用于计算形状主成分分析(Shape PCA)及第一形状主成分的PCA比值谱的R脚本。所需的MRA源脚本可从http://doi.org/10.5281/zenodo.4250142获取。 - Synema_globosum_AR9379_PV.jpg等:使用徕卡(LEICA)M205 C体视显微镜拍摄的标本照片。 1. AR_后的数字为标本在伯尔尼自然历史博物馆(Natural History Museum Bern, NMBE)的馆藏编号,该编号亦用于本数据集的数据文件中。 2. 名为"Synema_globosum_AR9163_with_measurements"的照片标注了测量位点,其余原始照片均未标注测量位置。 示例图像、指标名称与定义如下: Synema_globosum_AR9163_with_measurements | cym.l | 盾体长(Cymbium length):盾体前缘至盾体顶端的距离 Synema_globosum_AR9163_with_measurements | cym.b | 盾体宽度(Cymbium breadth):盾体的最大宽度 Synema_globosum_AR9163_with_measurements | bul.b | 生殖球宽度(Bulb breadth):生殖器球的最大宽度 Synema_globosum_AR9163_with_measurements | tib.b | 胫节基部宽度(Tibia breadth):髌关节处胫节基部的宽度



