MOESM3 of Origin and recent expansion of an endogenous gammaretroviral lineage in domestic and wild canids

Additional file 3: Table S2. Information for non-reference sites considered in analyses. The coordinates relative to CanFam3.1 are provided for each identified non-reference insertion. For each site, information pertaining to the insertion orientation, target site duplication (relative to the CanFam3.1 reference), detected insertion alleles (provirus, solo LTR), and element sequence is provided. Primer sequences are provided for validated sites. (A) Information for sequenced loci and validated sequences. (B) Information for loci with complete assembled insertion alleles. (C) Information for loci with partially assembled insertion alleles.

附加文件3：表S2。本分析中纳入的非参考位点相关信息。针对每一个鉴定出的非参考插入序列，均提供了相对于犬参考基因组CanFam3.1的坐标位置。针对每个位点，均提供了插入方向、靶位点重复（相对于CanFam3.1参考基因组）、检测到的插入等位基因（前病毒、单拷贝长末端重复序列（solo LTR））以及元件序列相关信息。针对已验证的位点，提供了其引物序列信息。（A）测序位点与验证序列相关信息；（B）插入等位基因完全组装的位点相关信息；（C）插入等位基因部分组装的位点相关信息。