Additional file 2 of Housekeeping gene gyrA, a potential molecular marker for Bacillus ecology study
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Additional file 2: TableS1 The information of 127 strains for colony PCR. TableS2 The genomes information for nucleotide variability analysis of gyrA gene and 16S rRNA gene in inter- and intraspecies Bacillus. TableS3 The gyrA gene database information of Bacillus for computer simulation. TableS4 The general primers converted from degenerate primer pair gyrA3. TableS5 The genomes information for SNP analysis of gyrA gene and 16S rRNA gene in four Bacillus species. TableS6 The information of sequences amplified by three gyrA gene primer pairs in computer simulation. TableS7 The analysis results of mock community amplicon sequencing. DatasetS1 The 16S rRNA gene sequences of the eight Bacillus strains for mock Bacillus community. DatasetS2 The gyrA gene sequences of the eight Bacillus strains for mock Bacillus community. DatasetS3 The 16S rRNA gene sequences of the seven Bacillus strains.
附加文件2:表S1:127株用于菌落PCR的菌株信息。
表S2:芽孢杆菌属(Bacillus)种间及种内gyrA基因与16S核糖体RNA(16S rRNA)核苷酸变异分析所用基因组信息。
表S3:用于计算机模拟的芽孢杆菌属gyrA基因数据库信息。
表S4:由简并引物对gyrA3衍生得到的通用引物信息。
表S5:4种芽孢杆菌属物种中gyrA基因与16S rRNA单核苷酸多态性(Single Nucleotide Polymorphism,SNP)分析所用基因组信息。
表S6:计算机模拟中3组gyrA基因引物对扩增得到的序列信息。
表S7:模拟群落扩增子测序分析结果。
数据集S1:用于模拟芽孢杆菌群落的8株芽孢杆菌的16S rRNA基因序列。
数据集S2:用于模拟芽孢杆菌群落的8株芽孢杆菌的gyrA基因序列。
数据集S3:7株芽孢杆菌的16S rRNA基因序列。
创建时间:
2022-10-26



