meta_data

<b>tblhctmeta.csv: Day and source of hematopoietic cell transplant (HCT) for 1,278 patients</b>PatientID: deidentified identifier of patientsTimepointOfTransplant: deidentified day of HCTHCTSource: hematopoietic cell sources for HCT patients (BM_unmodified: bone marrow; PBSC_unmodified: peripheral blood stem cells; TCD: T-cell depleted; cord: cord blood)Disease: disease of patientswbcPatientId, autoFmtPatientId, nejmPatientId: identifiers for the same patients if they were also included in another previous study (wbcPatientId: Schluter, J. et al. 2019. The gut microbiota influences circulatory immune cell dynamics in humans. <i>BioRxiv</i>; autoFmtPatientId: Taur, Y. et al. 2018. Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant. <i>Science Translational Medicine</i> 10(460); nejmPatientId: Peled, J.U. et al. 2020. Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation. <i>New England Journal of Medicine</i>, <i>382</i>(9), pp.822-834.)<br><b>tbldrug.csv: Timing and route of drug administration for 1,279 patients</b>PatientID: deidentified identifier of patientsStartTimepoint: deidentified day when drug administration startedStopTimepoint: deidentified day when drug administration stopped (including the day)Factor: name of the drugCategory: category of the drugRoute: route of drug administration<br>StartDayRelativeToNearestHCT/StopDayRelativeToNearestHCT: start/stop day of the drug administration relative to the nearest day of bone marrow transplant<br><b>tblInfectionsCidPapers.csv: Day of positive blood cultures for 426 patients </b>(include only microbes analyzed in<b> </b>1. Taur, Y., et al. 2012. Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. <i>Clinical infectious diseases</i>, <i>55</i>(7), pp.905-914; 2. Stoma, I., et al. 2020. Compositional flux within the intestinal microbiota and risk for bloodstream infection with gram-negative bacteria. <i>Clinical Infectious Diseases</i>.)PatientID: deidentified identifier of patientsTimepoint: deidentified day of infectionInfectiousAgent: the bacteria causing infectionsDayRelativeToNearestHCT: day of infection relative to the nearest day of bone marrow transplant<br><b>tblwbc.csv: Daily measurements of white blood cells for 1,242 patients</b>PatientID: deidentified ID of patientsTimepoint: deidentified day of blood cell measurementBloodCellType: lymphocyte cells (Lymphocytes), neutrophil cells (Neutrophils), and total white blood cells (WBCtotal)Value: blood cell counts (unit: 1,000 cells/uL)<br>DayRelativeToNearestHCT: day of blood cell measurement relative to the nearest day of bone marrow transplant<br><br><b>tbltemperature.csv: </b>temperatures for 1,249 patientsPatientID: deidentified identifier of patientsTimepoint: deidentified day when patient temperature was measuredMaxTemperature: Maximum temperature (unit: Fahrenheit) recorded on that day for that patientDayRelativeToNearestHCT: day of temperature measurement relative to the nearest day of bone marrow transplant<br><br><b>tblVanA.csv</b>: Results of PCR detection for <i>vanA </i>gene for 7,547 samplesSampleID: stool sample identifier VanA: whether <i>vanA</i> gene is detected in the sample

<b>tblhctmeta.csv：1278例患者造血细胞移植（hematopoietic cell transplant, HCT）的时机与供源</b>
PatientID：患者去标识化标识符
TimepointOfTransplant：造血细胞移植的去标识化移植日
HCTSource：造血细胞移植患者的造血细胞来源（BM_unmodified：未修饰骨髓；PBSC_unmodified：未修饰外周血干细胞；TCD：T细胞清除型；cord：脐带血）
Disease：患者所患疾病
wbcPatientId, autoFmtPatientId, nejmPatientId：若患者同时纳入既往另一项研究，则为对应患者的标识符（wbcPatientId：Schluter, J. 等，2019年。肠道菌群影响人体循环免疫细胞动态。<i>BioRxiv</i>；autoFmtPatientId：Taur, Y. 等，2018年。自体粪便菌群移植重建抗生素治疗患者的肠道菌群。<i>Science Translational Medicine</i> 10(460)；nejmPatientId：Peled, J.U. 等，2020年。菌群作为异基因造血细胞移植死亡率的预测因子。<i>New England Journal of Medicine</i>, <i>382</i>(9), pp.822-834.）
<b>tbldrug.csv：1279例患者的给药时机与给药途径</b>
PatientID：患者去标识化标识符
StartTimepoint：给药开始的去标识化日期
StopTimepoint：给药停止的去标识化日期（含停药当日）
Factor：药物名称
Category：药物类别
Route：给药途径
StartDayRelativeToNearestHCT/StopDayRelativeToNearestHCT：距最近一次骨髓移植的给药开始/停止日（即给药开始/停止日期与最近骨髓移植日的相对天数）
<b>tblInfectionsCidPapers.csv：426例患者的血培养阳性日期</b>
（仅纳入在1. Taur, Y. 等，2012年。肠道定植与异基因造血干细胞移植患者菌血症风险。<i>Clinical infectious diseases</i>, <i>55</i>(7), pp.905-914；2. Stoma, I. 等，2020年。肠道菌群组成动态与革兰阴性菌血流感染风险。<i>Clinical Infectious Diseases</i> 中分析过的微生物）
PatientID：患者去标识化标识符
Timepoint：感染发生的去标识化日期
InfectiousAgent：引发感染的病原菌
DayRelativeToNearestHCT：距最近一次骨髓移植的感染日（即感染日期与最近骨髓移植日的相对天数）
<b>tblwbc.csv：1242例患者的白细胞每日检测数据</b>
PatientID：患者去标识化标识符
Timepoint：血细胞检测的去标识化日期
BloodCellType：血细胞类型，包括淋巴细胞（Lymphocytes）、中性粒细胞（Neutrophils）及白细胞总数（WBCtotal）
Value：血细胞计数（单位：1000个细胞/微升）
DayRelativeToNearestHCT：距最近一次骨髓移植的血细胞检测日（即检测日期与最近骨髓移植日的相对天数）

<b>tbltemperature.csv：1249例患者的体温数据</b>
PatientID：患者去标识化标识符
Timepoint：患者体温测量的去标识化日期
MaxTemperature：该患者当日记录的最高体温（单位：华氏度）
DayRelativeToNearestHCT：距最近一次骨髓移植的体温测量日（即测量日期与最近骨髓移植日的相对天数）

<b>tblVanA.csv：7547份样本的<i>vanA</i>基因PCR检测结果</b>
SampleID：粪便样本标识符
VanA：样本中是否检出<i>vanA</i>基因