遇见数据集

Quality Controls.

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Figshare2015-12-02 更新2026-04-29 收录
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aOne region of an 8 gasket PTP was used for a positive control (C). Negatives, positives, and pilot samples (representing a subset of three subjects) were sequenced in one region on the same run, and pilot l (A) and negative control (B) sequences partitioned by MID.bQIIME restrictions: Minimum length = 100 (after trimming forward primer and MID); maximum “N” = 1, maximum homocopolymer = 10; maximum forward primer mismatch = 2; maximum barcode mismatch = 2.cGenus assignments (sequence counts): Unclassified fungi (6 sequences); Saccharomyces (3); Tumularia (3); Malassezia (2); Rhodotorula (2); Candida (1); Ceratobasidium (1); Galerina (1). One of the genera assignments (Ceratobasidium) was at a very weak E-value (3.9); all others were at very strong E-values (−85 to −177).dIncludes Candida. All non-Candida genera are constituted by singleton sequences; 4 (Scutellospora,Tomentella, Saccharomyces, Cryptococcus) have very weak E-values (0.11–4.8); 1 (Fusarium) has a strong E-value (−119).

a. 本实验采用8垫片PTP的一个区域作为阳性对照(C)。阴性对照、阳性对照及代表3名受试对象子集的预实验样本,于同一次测序运行中在同一区域完成测序;其中预实验样本l(A)与阴性对照(B)的序列通过MID(分子标识符,Molecular Identifier)进行划分。 b. QIIME(定量微生物生态学分析软件,Quantitative Insights Into Microbial Ecology)质控过滤阈值设置如下:修剪正向引物与MID后的序列最小长度为100;最大允许模糊碱基(N)数为1;最大允许同聚物长度为10;正向引物最大错配数为2;测序条形码最大错配数为2。 c. 属水平分类注释及对应序列计数如下:未分类真菌(6条序列)、酿酒酵母属(Saccharomyces,3条)、Tumularia(3条)、马拉色菌属(Malassezia,2条)、红酵母属(Rhodotorula,2条)、假丝酵母属(Candida,1条)、角担菌属(Ceratobasidium,1条)、盔孢伞属(Galerina,1条)。其中角担菌属的分类注释对应的E-值(期望分值,Expectation Value)为3.9(极低),其余所有分类注释的E-值均处于-85至-177的强负值区间。 d. 本次分析纳入假丝酵母属(Candida)。所有非假丝酵母属的分类单元均由单例序列构成;其中4个属(球囊霉属Scutellospora、Tomentella、酿酒酵母属Saccharomyces、隐球菌属Cryptococcus)对应的E-值极弱(0.11~4.8),1个属(镰孢菌属Fusarium)对应的E-值较强(-119)。

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2015-12-02
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