Jan2021 reference datasets for Mitohelper
收藏Zenodo2025-03-14 更新2026-05-25 收录
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资源简介:
<strong>Reference datasets (Jan 2021 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to the Mitohelper's DevWiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Jan2021.tsv (668,366 records; Jan 2021 update) mitofish.12S.Jan2021.tsv (37,314 records) mitofish.COI.Jan2021.tsv (224,712 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza
**用于Mitohelper的参考数据集(2021年1月更新)(https://github.com/aomlomics/mitohelper)**
Mitohelper是为助力鱼类环境DNA(environmental DNA, eDNA)研究中的实验设计、序列比对可视化及参考序列分析而构建的代码仓库。请参阅Mitohelper的开发维基(DevWiki)以了解数据库构建流程。
一、制表符分隔格式的参考数据库文件,包含基因、分类学及序列信息:
mitofish.all.Jan2021.tsv(668366条记录;2021年1月更新)
mitofish.12S.Jan2021.tsv(37314条记录)
mitofish.COI.Jan2021.tsv(224712条记录)
二、经去重复处理且兼容QIIME 2的12S/12S+16S+18S 核糖体RNA(ribosomal RNA, rRNA)参考数据集:
12S-seqs-derep-uniq.qza
12S-tax-derep-uniq.qza
12S-16S-18S-seqs.qza
12S-16S-18S-tax.qza
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Zenodo创建时间:
2021-01-06



