Additional file 9 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

Additional file 9 Supplementary Table S8. Change in accuracy before and after running the joint genotyping pipeline on the Walker 2013 M. tuberculosis data. Joint genotyped precision is calculated in two ways: using just the non-reference allele calls, and using all calls. Note that this does not apply to the recall because in that case we only look for non-reference calls, and so including reference calls has no effect.

附加文件9：补充表S8。本表格呈现了针对Walker 2013年的结核分枝杆菌 (M. tuberculosis) 数据集运行联合基因分型流程 (joint genotyping pipeline) 前后的准确率变化情况。联合基因分型精度的计算包含两种方式：仅采用非参考等位基因调用 (non-reference allele calls) 结果，以及使用全部调用结果。需注意，该计算逻辑不适用于召回率 (recall)，这是由于召回率仅关注非参考等位基因的调用结果，因此纳入参考等位基因调用不会对其产生任何影响。