kaken2 database of primate genomes for host decontamination
收藏资源简介:
kraken2 database of primate genomes. Used in Nephele pipelines for decontamination of metagenomic datasets from primate host reads (inclusive of human genome). Contained assemblies: Homo sapiens (GRCh38.p14), Macaca mulatta (Mmul_10), Macaca fascicularis (MFA1912RKSv2), Macaca nemestrina (Mnem_1.0), Cercocebus atys (Caty_1.0), Pan troglodytes (NHGRI_mPanTro3-v1.1-hic.freeze_pri), Pan paniscus (NHGRI_mPanPan1-v1.1-0.1.freeze_pri), Gorilla gorilla (NHGRI_mGorGor1-v1.1-0.2.freeze_pri), Pongo pygmaeus (NHGRI_mPonPyg2-v1.1-hic.freeze_pri), Callithrix jacchus (mCalJa1.2.pat.X)
灵长类基因组Kraken2数据库,应用于Nephele流程,可用于去除宏基因组数据中包含人类基因组在内的灵长类宿主测序读段污染。 所包含的基因组组装序列如下: 智人(Homo sapiens,GRCh38.p14), 恒河猴(Macaca mulatta,Mmul_10), 食蟹猴(Macaca fascicularis,MFA1912RKSv2), 豚尾猴(Macaca nemestrina,Mnem_1.0), 乌白眉猴(Cercocebus atys,Caty_1.0), 黑猩猩(Pan troglodytes,NHGRI_mPanTro3-v1.1-hic.freeze_pri), 倭黑猩猩(Pan paniscus,NHGRI_mPanPan1-v1.1-0.1.freeze_pri), 西部大猩猩(Gorilla gorilla,NHGRI_mGorGor1-v1.1-0.2.freeze_pri), 婆罗洲猩猩(Pongo pygmaeus,NHGRI_mPonPyg2-v1.1-hic.freeze_pri), 普通狨(Callithrix jacchus,mCalJa1.2.pat.X)



