Inhibition of fungal pathogens across genotypes and temperatures by amphibian skin bacteria

Dataset consists of two sets of data files with associated R code:<br>1a) Raw plate read data titled "final_all_plates_gabe_no_contam.csv". This file consists of all OD readings for every well for every day that readings were taken. We used R code to correct baseline zoospore OD, fit a linear regression to the OD readings over time, remove wells with low r2 values, and calculate inhibition scores<br>1b) R code to work with the "final_all_plates...csv is titled "Calculate_score_inhibit_final.R"<br>2a) The inhibition scores for each well titled "Inhibition_scores.final.csv". This is the output of the R code above. We did edit this file in excel to add a genotype column that is not in the R code<br>2b) The averages of inhibition scores used to make the heatmap figure titled "heatmap_averages_final.csv". See more details in the associated .Rmd file to see how we generated these values. <br>2c) R code to do analyses of inhibition scores and make figures titled "Publish_Bac_Temp_BdBsal.Rmd"<br>2d) The knitted .Rmd file titled "Publish_Bac_Temp_BdBsal.html"

本数据集包含两组数据文件及配套的R代码：<br>1a) 微孔板原始读数数据文件名为"final_all_plates_gabe_no_contam.csv"，该文件存储了所有检测日期下每个孔的光密度（Optical Density, OD）读数。我们通过R代码完成了以下操作：校正游动孢子的本底OD值、对随时间变化的OD读数拟合线性回归模型、剔除决定系数（R²）较低的孔，并计算抑制评分。<br>1b) 用于处理上述"final_all_plates...csv"文件的R代码名为"Calculate_score_inhibit_final.R"。<br>2a) 各孔的抑制评分文件名为"Inhibition_scores.final.csv"，为上述R代码的输出结果。我们曾在Excel中对该文件进行编辑，添加了R代码未包含的基因型列。<br>2b) 用于绘制热图的抑制评分平均值文件名为"heatmap_averages_final.csv"，关于这些数值的生成细节，请参阅配套的.Rmd文件。<br>2c) 用于开展抑制评分分析并绘制图表的R代码名为"Publish_Bac_Temp_BdBsal.Rmd"。<br>2d) 已完成编织的R Markdown输出文件名为"Publish_Bac_Temp_BdBsal.html"。