SPAdes whole genome scaffolds assembled from Greenlandic Alaria esculenta (TTB000062)

Whole genome data was generated from a kelp specimen Alaria esculenta. Reads were assembled using SPAdes. Scaffolds from SPAdes assembly were further filtered for plastid sequences using BLAST+. Ghost plastid annotations are included in .gb format. Alignments used in hyphy analyses are also included. Alignments are by gene, with concatenated alignments based on functional group. Concatenated gene alignments were masked using Gblocks.

本数据集的全基因组数据源自翅藻（Alaria esculenta）标本。测序读段（Reads）通过SPAdes软件完成组装。针对SPAdes组装得到的支架序列，研究人员进一步利用BLAST+工具筛选质体序列。本数据集包含以GenBank（.gb）格式存储的幽灵质体注释，以及用于HyPhy系统发育分析的序列比对文件。序列比对文件按基因划分，同时包含基于功能类群构建的串联比对序列；串联基因比对序列已通过Gblocks软件完成序列屏蔽处理。