遇见数据集

Test data for CIBERER nextflow pipelines

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Zenodo2025-06-25 更新2026-05-26 收录
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The test files used for the mosaicism-nextflow pipeline, owned by CIBERER pipelines, are processed files. The raw data originates from sample NA18278 from the GIAB project, accessible at https://www.internationalgenome.org/data-portal/search?q=NA12878. The specific region selected for analysis is: 17:7577873-7580187. The test dataset for CNV (test_set.tar.gz), generated in silico by VISOR (https://doi.org/10.1093/bioinformatics/btz719), consists of 8 combinations of 4 different haplotypes derived from chromosome 22 (GRCh38), at an average coverage of 30x. A small test set for CNVs (CNV_test_set.tar.gz) consists on 10 samples from 1000 genomes project (hs37d5), each of them with a deletion in one exon of BRCA1.

本数据集为CIBERER流程库所维护的马赛克分析nextflow流程(mosaicism-nextflow pipeline)所用的测试文件,均为经过预处理的文件。其原始测序数据源自基因组在瓶中(Genome in a Bottle, GIAB)项目的NA18278样本,可通过链接https://www.internationalgenome.org/data-portal/search?q=NA12878获取。 本次分析选定的目标区域为:17号染色体7577873至7580187区域。 用于拷贝数变异(Copy Number Variant, CNV)分析的测试数据集test_set.tar.gz,由VISOR工具通过计算机模拟生成(关联DOI:https://doi.org/10.1093/bioinformatics/btz719),包含源自GRCh38版本22号染色体的4种不同单倍型的8种组合,平均测序覆盖度为30×。 另一套小型拷贝数变异测试集CNV_test_set.tar.gz,包含来自千人基因组计划(1000 Genomes Project)的10份hs37d5样本,每份样本的乳腺癌1号基因(Breast Cancer 1, BRCA1)的一个外显子均存在缺失变异。

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Zenodo
创建时间:
2025-06-25
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