Human chromosome 14 (GAGE) assembly evaluation and features estimation.
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For each assembler we report the number of contigs/scaffolds produced (Ctg), the NG50, the percentage of short (Chaff) contigs (the percentage is computed with respect to the real genome length), the number of long (i.e., >5 bp) indels (Indels), the number of Misjoins, the number of inversions (Inv), the number of relocations (Rel), the features sensitivity (Sens), and the features specificity (Spec).
针对每一款基因组组装工具(assembler),本研究将汇报如下统计指标:所生成的重叠群(contig)/支架(scaffold)数量(记为Ctg)、NG50值、短重叠群(Chaff contig)占比(该占比以真实基因组长度为基准计算)、长度大于5 bp的长插入缺失(indel)数量(记为Indels)、错接事件数量、倒位(inversion)数量(记为Inv)、易位(relocation)数量(记为Rel)、特征灵敏度(Sens)与特征特异性(Spec)。
创建时间:
2015-12-02



