Additional file 5 of A potential role for intragenic miRNAs on their hosts' interactome

Additional file 5: Full Pathway Information. The table provides all 74 KEGG pathways associated with one or more host genes. For each KEGG pathway KEGG ID, pathway name, p-value and odds ratio for the observed number of host genes, total number of expected genes, total number of observed genes, total number of genes in that pathway, pathway url, host gene names and Entrez-IDs, target coverage and p-value, proportion of targets with conserved target sites within the hosts' pathway, proportion of targets with conserved target sites not within the hosts' pathway, q-value of the difference of these two proportions, and Entrez gene IDs for all predicted targets are provided. The asterisk behind a gene ID indicates a conserved target site for that target. It is important to note, however, that a proportion calculated from these gene IDs may differ from the proportion given, as the gene IDs are based on agreement of two prediction methods, whereas the proportion of conserved targets was calculated on predictions made by targetscan only. (XLS 56 KB)

附加文件5：完整通路信息。本表格涵盖全部74条与一个或多个宿主基因相关的KEGG（Kyoto Encyclopedia of Genes and Genomes，京都基因与基因组百科全书）通路。针对每条KEGG通路，表格均提供如下信息：KEGG通路编号（KEGG ID）、通路名称、宿主基因观测数对应的p值与比值比（odds ratio）、预期基因总数、观测基因总数、该通路内基因总数、通路链接地址、宿主基因名称与Entrez基因编号（Entrez-ID）、靶标覆盖度（target coverage）与p值、宿主通路内带有保守靶位点的靶标占比、宿主通路外带有保守靶位点的靶标占比、这两项占比差值的q值，以及所有预测靶标的Entrez基因编号。基因ID后的星号表示该靶标存在保守靶位点。但需注意：由上述基因ID计算得到的占比可能与表格给出的占比存在差异，原因在于此处的基因ID基于两种预测方法的一致性结果，而保守靶标的占比仅通过TargetScan的预测结果计算得到。（XLS格式，大小56 KB）