Additional file 2: of Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map

The ZIP archive of a package that contains the original versions of Perl modules and scripts used for creating the simulated and reconstructed MSAs and for analyzing these MSAs. It also contains a README file that describes how to use the modules and scripts. (The modules and scripts will run on a Mac OS X terminal. And it will probably run on other UNIX platforms, although we have not tested whether they indeed do.) The package also contains the Dawg control files that were used for the simulations. The latest version of the package (“ComplLiMment_P.verxxx”) can be found in the ‘lolipog’ directory at the FTP repository of the Bioinformatics Organization [85]. (ZIP 4746 kb)

本ZIP压缩包内含用于生成模拟与重构多序列比对（Multiple Sequence Alignment，MSA）、并对上述多序列比对开展分析的Perl模块与脚本的原始版本。包内还附带一份自述文件，详细说明各模块与脚本的使用方法。（注：该模块与脚本可在Mac OS X终端环境下运行，理论上亦可在其他UNIX平台上运行，但我们未针对此类平台完成兼容性验证。）本软件包同时包含用于本次模拟实验的Dawg控制文件。该软件包的最新版本“ComplLiMment_P.verxxx”可于生物信息学组织（Bioinformatics Organization）FTP仓库的“lolipog”目录中获取[85]。（ZIP文件大小：4746 kb）