Differentially expressed transcripts represented by ESTs identified in both libraries.

The AGI number indicates putative Arabidopsis orthologs of bean transcripts identified with tBLASTX search against the TAIR10 database (E-value ≤1×10−4 was considered as significant). Statistical significance was calculated with the Fisher exact test (p≤0.1).aThe bean EST orthologs of each AGI number are listed in Table S2.bRE = relative expression values obtained by −Log10 of p-values for the up-regulated transcripts and by Log10 of p-values for the down-regulated genes, according to procedures described by Zhou et al.[79].AGI编号指代通过tBLASTX比对TAIR10数据库（拟南芥信息资源数据库第10版，以E值≤1×10⁻⁴作为显著性判定阈值）所鉴定的菜豆转录本的推定拟南芥直系同源基因。统计学显著性通过费希尔精确检验计算（p值≤0.1作为显著性判定阈值）。a 各AGI编号对应的菜豆表达序列标签（Expressed Sequence Tag, EST）直系同源基因详见表S2。b RE为相对表达量值：上调转录本的相对表达量通过对其p值取−Log₁₀计算得到，下调基因的相对表达量则通过对其p值取Log₁₀计算得到，具体分析流程参照Zhou等人[79]的研究方法。