Total Number of Differentially Expressed Genes in the Seed Coats of the Clark and Harosoy Isoline Pairs at Different Seed Weight Stages.

The number of differentially expressed genes in Clark or Harosoy standard versus the defective seed coat isoline that meet the criteria of ≥2 fold differential expression, ≥5 RPKM and p-value ≤0.05 by DESeq analysis. Both: the number of differentially expressed genes shared in common between both the Clark and Harosoy isoline pairs and also the expression levels of these genes are in the same direction i.e. if expression of a particular gene was higher in Clark wild-type and lower in the defective isoline, it was also higher in Harosoy wild type isoline and lower in Harosoy defective isoline. Opposite: If a particular gene showed higher expression in the standard isoline of Clark compared to the Clark defective, but it showed higher expression in the defective Harosoy compared to the standard Harosoy line.

本数据集统计了经DESeq分析，满足≥2倍差异表达、RPKM≥5且p值≤0.05的差异表达基因（differentially expressed genes）数量，比较组为Clark或Harosoy标准型近等基因系与其对应的种皮缺陷型近等基因系。
共有型：指同时存在于Clark与Harosoy两个近等基因系对中的共通差异表达基因的数量，且此类基因的表达变化方向完全一致。具体而言，若某基因在Clark野生型中表达量更高、在Clark种皮缺陷型近等基因系中表达量更低，则该基因在Harosoy野生型中表达量同样更高，在Harosoy种皮缺陷型近等基因系中表达量更低。
反向型：若某基因在Clark标准型近等基因系中的表达量高于Clark缺陷型近等基因系，但在Harosoy缺陷型近等基因系中的表达量高于Harosoy标准型近等基因系。