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MOESM7 of Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

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Figshare2020-01-20 更新2026-04-08 收录
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Additional file 7: Table S6. Groups of grandparents, parent and offspring inferred with less than 100 Mendelian Errors (ME), indicating the preferred names of the offspring (Offspring), parent (Parent) and grandparents (GrandParent 1, GrandParent 2), i.e. parent couple of the missing parent, and their MUNQ (MUNQ O, MUNQ P, MUNQ GP1, MUNQ GP2), the number of ME in the 25 K SNP set (# ME 25 K) and in the 253 K SNP set (# ME 253 K), presupposed parents of the offspring (Parent1 from Literature, Parent 2 from Literature) and source of this documentation (Source_parents), consistency of inferred parent with literature (Ped_consistency), consistency of dates, i.e. offspring younger than its inferred grandparent(s), on the basis of documented dates indicated in Additional file 1: Table S1 (Date consistent GP1 and Date consistent GP2).

附加文件7:表S6。本表格统计了孟德尔错误(Mendelian Errors,ME)数量少于100的祖父母、亲本与子代群组,其中明确了子代(Offspring)、亲本(Parent)以及祖父母(祖父母1、祖父母2,即缺失亲本的双亲夫妇)的推荐命名。同时包含以下信息:各群组对应的MUNQ值(MUNQ O、MUNQ P、MUNQ GP1、MUNQ GP2)、25K单核苷酸多态性(Single Nucleotide Polymorphism,SNP)数据集下的孟德尔错误计数(# ME 25 K)、253K SNP数据集下的孟德尔错误计数(# ME 253 K)、子代的预设文献亲本(文献来源亲本1、文献来源亲本2)、本记录的来源(Source_parents)、推断亲本与文献记载的一致性(Ped_consistency),以及基于附加文件1:表S1中记载的日期信息验证的日期一致性:即子代年龄是否小于其推断祖父母的年龄,对应指标Date consistent GP1与Date consistent GP2。
提供机构:
Charles-Eric Durel; Frantisek Paprstein
创建时间:
2020-01-03
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