Additional file 2 of Decoding the RNA viromes in rodent lungs provides new insight into the origin and evolutionary patterns of rodent-borne pathogens in Mainland Southeast Asia

Additional file 1. Table S1. Samples of the 30 animal species used in this study and the countries (provinces) and dates of collection. Table S2. Overview of virus-associated reads. Table S3. Overview of sequence reads from mammal related viral families and unclassified RNA viruses. Table S4. Origin and accession number of viruses identified in this study. Table S5. Nucleotide sequence identity of novel rodent hantaviruses and known hantaviruses within the L, M, and S segment. Table S6. Nucleotide sequence identity of novel rodent PhleVs and known PhleVs within the L open reading frame. Table S7. Nucleotide sequence identity of novel rodent arenaviruses and known arenaviruses (AreV) in the L-, G- and N-encoding regions. Table S8. Nucleotide sequence identity of novel rodent rhabdoviruses and known rhabdoviruses (RhaV) in the L protein-encoding regions. Table S9. Nucleotide sequence identity of novel rodent paramyxoviruses and known paramyxoviruses (ParaV) in the L protein-encoding regions. Table S10. Nucleotide sequence identity of novel rodent and known hepaci-, pegi- and pestviruses. Table S11. ORF1b nucleotide sequence identity of novel rodent and known arteriviruses. Table S12. Nucleotide sequence identity of novel rodent and known coronaviruses (CoVs) in the RdRP-encoding region. Table S13. Nucleotide sequence identity of novel rodent and known hepeviruses (HEVs) in the ORF1 region. Table S14. Nucleotide sequence identity of novel rodent and known picornaviruses (PicoVs) in the RdRP-encoding region. Table S15. Nucleotide sequence identity of novel rodent and known astroviruses (AstroVs) in the RdRP-encoding region. Table S16. Nucleotide sequence identity of novel rodent unclassified RNA viruses and known viruses in the RdRP-encoding region.

附加文件1。表S1：本研究涉及的30种动物物种的样本信息，及其采集国家（省份）与采集日期。表S2：病毒相关读数概况。表S3：哺乳动物相关病毒科及未分类RNA病毒的序列读数概况。表S4：本研究中鉴定的病毒的来源与登录号。表S5：新型啮齿动物汉坦病毒与已知汉坦病毒在L、M、S片段内的核苷酸序列同源性。表S6：新型啮齿动物白蛉病毒（PhleVs）与已知白蛉病毒在L开放阅读框内的核苷酸序列同源性。表S7：新型啮齿动物沙粒病毒与已知沙粒病毒（AreV）在L、G及N编码区的核苷酸序列同源性。表S8：新型啮齿动物弹状病毒与已知弹状病毒（RhaV）在L蛋白编码区的核苷酸序列同源性。表S9：新型啮齿动物副黏病毒与已知副黏病毒（ParaV）在L蛋白编码区的核苷酸序列同源性。表S10：新型啮齿动物与已知肝炎病毒属、佩吉病毒属及瘟病毒属的核苷酸序列同源性。表S11：新型啮齿动物与已知动脉炎病毒的ORF1b核苷酸序列同源性。表S12：新型啮齿动物与已知冠状病毒（CoVs）在RNA依赖的RNA聚合酶（RNA-dependent RNA polymerase, RdRP）编码区的核苷酸序列同源性。表S13：新型啮齿动物与已知戊型肝炎病毒（HEVs）在ORF1区的核苷酸序列同源性。表S14：新型啮齿动物与已知小RNA病毒（PicoVs）在RdRP编码区的核苷酸序列同源性。表S15：新型啮齿动物与已知星状病毒（AstroVs）在RdRP编码区的核苷酸序列同源性。表S16：新型啮齿动物未分类RNA病毒与已知病毒在RdRP编码区的核苷酸序列同源性。