Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [CODE: example files]

This repository contains example ChIP-, MeDIP- and RNA-seq samples to illustrate how to run the analyses regarding those samples, as described by the run_scientific_data_analysis.pdf in the scripts repository (https://dx.doi.org/10.6084/m9.figshare.3490613). The files are tab-delimited with sample names in one column and links to SRA files from the GEO dataset repository in the second column. The file names correspond to the data type of the samples, i.e. "sra_chip.txt" contains ChIP-seq samples, "sra_medip.txt" contains MeDIP-seq samples and "sra_rna.txt" contains RNA-seq samples.

本仓库收录了染色质免疫共沉淀测序（ChIP-seq）、甲基化DNA免疫沉淀测序（MeDIP-seq）及RNA测序（RNA-seq）三类示例样本，用于演示如何针对此类样本开展数据分析，相关操作流程详见脚本仓库中的《run_scientific_data_analysis.pdf》（链接：https://dx.doi.org/10.6084/m9.figshare.3490613）。所有文件均采用制表符分隔格式，第一列为样本名称，第二列为基因表达综合数据库（Gene Expression Omnibus，GEO）数据集仓库中序列读取档案（Sequence Read Archive，SRA）文件的访问链接。文件名与样本数据类型一一对应："sra_chip.txt"包含ChIP-seq样本信息，"sra_medip.txt"包含MeDIP-seq样本信息，"sra_rna.txt"包含RNA-seq样本信息。