Metagenomic Data for Browning Peninsula and Mitchell Peninsula (sampled 2005)
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Sample collection:All soils were collected in 2005 and stored at -80˚C prior to gDNA extraction using the FastDNA SPIN kit for soil (MP Biomedicals, NSW, Australia). Three soil samples were obtained from Mitchell Peninsula (66°31'S, 110°59'E) and three were obtained from Browning Peninsula (66°27'S, 110°32'E). Samples from both sites were selected along a transect, with specific information provided below. Metagenome sequencing and assembly:Metagenomic shotgun libraries were prepared from community gDNA extractions using the Nextera DNA Flex Library Prep Kit (Illumina Inc.). Sequencing was performed on an Illumina NextSeq500 platform with 2×150bp base pair high output run chemistry and 5GB coverage per sample.Description of ACE Sample IDs (including in filenames) and the relevant soil samples: * SB9748- Soil barcode= 91062- Original barcode= 91604- Sample Site= Browning Peninsula- Transect= 3- Distance samples= 2m- Concentration of DNA sent= 1.2ng/µL (required concentration)- Volume DNA sent= 80µL* SB9749- Soil barcode= 91604- Original barcode= 26587- Sample Site= Browning Peninsula- Transect= 3- Distance samples= 102m- Concentration of DNA sent= 1ng/µL (required concentration)- Volume DNA sent= 80µL* SB9750- Soil barcode= 91606- Original barcode= 26617- Sample Site= Browning Peninsula- Transect= 3- Distance samples= 202m- Concentration of DNA sent= 0.3ng/µL (required concentration)- Volume DNA sent= 180µL* SB9751- Soil barcode= 91447- Original barcode= 36260- Sample Site= Mitchell Peninsula- Transect= 2- Distance samples= 2m- Concentration of DNA sent= 0.86ng/µL (required concentration)- Volume DNA sent= 80µL* SB9752- Soil barcode= 91477- Original barcode= 36290- Sample Site= Mitchell Peninsula- Transect= 2- Distance samples= 102m- Concentration of DNA sent= 0.9ng/µL (required concentration)- Volume DNA sent= 80µL* SB9753- Soil barcode= 91507- Original barcode= 36320- Sample Site= Mitchell Peninsula- Transect= 2- Distance samples= 202m- Concentration of DNA sent= 1.9ng/µL (required concentration)- Volume DNA sent= 80µL
样本采集:所有土壤样本均采集于2005年,在采用FastDNA SPIN土壤基因组DNA提取试剂盒(FastDNA SPIN kit for soil,MP Biomedicals,澳大利亚新南威尔士州)进行基因组DNA(genomic DNA,gDNA)提取前,所有样本均保存于-80℃超低温环境中。本研究从米歇尔半岛(66°31'S, 110°59'E)采集3份土壤样本,从布朗宁半岛(66°27'S, 110°32'E)采集3份土壤样本。两处采样点的样本均沿样带布设,具体详细信息如下文所述。
宏基因组测序与组装:采用Nextera DNA Flex文库制备试剂盒(Nextera DNA Flex Library Prep Kit,Illumina公司)从群体基因组DNA提取物构建宏基因组鸟枪法文库。测序在Illumina NextSeq500平台上完成,使用2×150bp双端高通量输出测序化学试剂,每份样本的测序覆盖度为5GB。
ACE样本ID(含文件名内的ID)及对应土壤样本说明:
* SB9748- 土壤条形码= 91062- 原始条形码= 91604- 采样点= 布朗宁半岛- 样带编号= 3- 样本间距= 2m- 送检DNA浓度= 1.2ng/µL(达标浓度)- 送检DNA体积= 80µL
* SB9749- 土壤条形码= 91604- 原始条形码= 26587- 采样点= 布朗宁半岛- 样带编号= 3- 样本间距= 102m- 送检DNA浓度= 1ng/µL(达标浓度)- 送检DNA体积= 80µL
* SB9750- 土壤条形码= 91606- 原始条形码= 26617- 采样点= 布朗宁半岛- 样带编号= 3- 样本间距= 202m- 送检DNA浓度= 0.3ng/µL(达标浓度)- 送检DNA体积= 180µL
* SB9751- 土壤条形码= 91447- 原始条形码= 36260- 采样点= 米歇尔半岛- 样带编号= 2- 样本间距= 2m- 送检DNA浓度= 0.86ng/µL(达标浓度)- 送检DNA体积= 80µL
* SB9752- 土壤条形码= 91477- 原始条形码= 36290- 采样点= 米歇尔半岛- 样带编号= 2- 样本间距= 102m- 送检DNA浓度= 0.9ng/µL(达标浓度)- 送检DNA体积= 80µL
* SB9753- 土壤条形码= 91507- 原始条形码= 36320- 采样点= 米歇尔半岛- 样带编号= 2- 样本间距= 202m- 送检DNA浓度= 1.9ng/µL(达标浓度)- 送检DNA体积= 80µL
提供机构:
Australian Antarctic Division



