Spatial transcriptomics of ovarian cancer tumors. Spatial transcriptomics of ovarian cancer tumors

Several ovarian cancer tumors from different anatomical sites and therapy statuses. A GUI to explore the data can be found at: https://visium-shiny-9hzfl.ondigitalocean.app/ Code to run the shiny app (same output as the GUI): https://github.com/kwells4/visium_public_shiny Code to replicate the analysis can be found: https://github.com/kwells4/visium_ovarian_cancer Overall design: Visium 10x spatial RNA-seq on 8 ovarian tumor samples.

本数据集涵盖取自不同解剖部位、具备不同治疗状态的多例卵巢癌肿瘤样本。可通过以下图形用户界面（GUI，Graphical User Interface）探索本数据集：https://visium-shiny-9hzfl.ondigitalocean.app/ 运行该Shiny应用的代码（与上述GUI输出效果一致）可从以下地址获取：https://github.com/kwells4/visium_public_shiny 复现本分析流程所需的代码可从以下地址获取：https://github.com/kwells4/visium_ovarian_cancer 实验整体设计：对8例卵巢肿瘤样本开展10x Visium空间转录组RNA测序。