Vulnerability and life-history traits correlate with the load of deleterious mutations in fish

Phylogenetic dataset associated to the article : Vulnerability and life-history traits correlate with the load of deleterious mutations in fish fastagenes.tar.gz : all the fasta file alignments used for the study. teleost.tr: phylogenetic tree used for mapnh et codeml analyses. tree-date.tr : phylogenetic tree used to control for phylogeny (tip labels corresponding to alignments). tree-date_spNames.tre : phylogenetic tree used to control for phylogeny (tip labels = species names). ENSDARE00000004235_nucl.fasta.bppml_dnds: example of option file for bppml. ENSDARE00000004235_nucl.fasta.mapnhYN98: example of option file for mapnh. ENSDARE00000004235_nucl.phylip.ctl: example of control file for codeml.

本数据集关联于论文《Vulnerability and life-history traits correlate with the load of deleterious mutations in fish》，配套压缩包为fastagenes.tar.gz，内含本研究使用的全部FASTA（FASTA）格式序列比对文件。其中teleost.tr为用于mapnh与codeml分析的系统发育树（phylogenetic tree）；tree-date.tr为用于系统发育校正分析的系统发育树（phylogenetic tree），其分支末梢标签对应序列比对文件；tree-date_spNames.tre为用于系统发育校正分析的系统发育树（phylogenetic tree），其分支末梢标签为物种名称。此外还包含以下分析工具的示例配置文件：ENSDARE00000004235_nucl.fasta.bppml_dnds为bppml的选项文件示例，ENSDARE00000004235_nucl.fasta.mapnhYN98为mapnh的选项文件示例，ENSDARE00000004235_nucl.phylip.ctl为codeml的控制文件示例。