Additional file 2 of Comparative transcriptomic analysis reveals the molecular mechanism underlying seedling biomass heterosis in Brassica napus

Additional file 2: Table S1. Phenotypic data of T1 are expressed as mean ± SD, T1 refers to 21 DAS. The data represents the results of three biological repetitions. Table S2. Phenotypic data of T2 are expressed as mean ± SD, T2 refers to 24 DAS. The data represents the results of three biological repetitions. Table S3. Quality evaluation of RNA-seq reads and mapped to reference genome. Table S4. Information on upregulated and downregulated DEGs of 21 DAS hybrid F1 (AM, CM, HM, HW) and their parents (A, C, H, M, W). Table S5. Information on upregulated and downregulated DEGs of 24 DAS hybrid F1 (AM, CM, HM, HW) and their parents (A, C, H, M, W). Table S6. Specific gene information for the classification of expression patterns of 12 types of ELD genes at 21 DAS. Table S7. Specific gene information for the classification of expression patterns of 12 types of ELD genes at 24 DAS. Table S8. Results of significant GO enrichment of F1 relative to the parent of the parental-ELD gene at 21 DAS. Table S9. Results of significant GO enrichment of F1 relative to the parent of the parental-ELD gene at 24 DAS. Table S10. Information on DEGs of strong hybrids and weak hybrids at 21 DAS. Table S11. The results of the significantly enriched GO terms of the DEGs shared by the two pairs of strong and weak hybrids at 21 DAS. Table S12. The results of the significantly enriched KEGG pathways of the DEGs shared by the two pairs of strong and weak hybrids at 21 DAS. Table S13. Information on DEGs of strong hybrids and weak hybrids at 24 DAS. Table S14. The results of the significantly enriched GO terms of the DEGs shared by the two pairs of strong and weak hybrids at 24 DAS. Table S15. The results of the significantly enriched KEGG pathways of the DEGs shared by the two pairs of strong and weak hybrids at 24 DAS. Table S16. Total genes in the yellow module. Table S17. KEGG results of significant enrichment of genes in the yellow module. Table S18. Hub genes in the yellow module. Table S19. GO terms that were significantly enriched with respect to hub genes in the yellow module. Table S20. Specific information about the sequence of the quantitative primers of randomly selected genes.

附加文件2：
表S1。T1的表型数据以平均值±标准差（Standard Deviation, SD）表示，其中T1指播种后21天（DAS）。该数据为3次生物学重复的实验结果。
表S2。T2的表型数据以平均值±标准差（SD）表示，其中T2指播种后24天（DAS）。该数据为3次生物学重复的实验结果。
表S3。RNA测序（RNA-seq）读数的质量评估及其比对至参考基因组的结果。
表S4。播种后21天的杂交F1代（AM、CM、HM、HW）及其亲本（A、C、H、M、W）的上调与下调差异表达基因（Differentially Expressed Genes, DEGs）信息。
表S5。播种后24天的杂交F1代（AM、CM、HM、HW）及其亲本（A、C、H、M、W）的上调与下调差异表达基因（DEGs）信息。
表S6。播种后21天的12类ELD基因表达模式分类的特异性基因信息。
表S7。播种后24天的12类ELD基因表达模式分类的特异性基因信息。
表S8。播种后21天亲本来源ELD基因的F1代相较于亲本的显著基因本体（Gene Ontology, GO）富集分析结果。
表S9。播种后24天亲本来源ELD基因的F1代相较于亲本的显著GO富集分析结果。
表S10。播种后21天强优势杂交种与弱优势杂交种的差异表达基因（DEGs）信息。
表S11。两对强、弱优势杂交种共有的差异表达基因（DEGs）在播种后21天的显著富集GO条目结果。
表S12。两对强、弱优势杂交种共有的差异表达基因（DEGs）在播种后21天的显著富集京都基因与基因组百科全书（Kyoto Encyclopedia of Genes and Genomes, KEGG）通路结果。
表S13。播种后24天强优势杂交种与弱优势杂交种的差异表达基因（DEGs）信息。
表S14。两对强、弱优势杂交种共有的差异表达基因（DEGs）在播种后24天的显著富集GO条目结果。
表S15。两对强、弱优势杂交种共有的差异表达基因（DEGs）在播种后24天的显著富集KEGG通路结果。
表S16。黄色模块的全体基因信息。
表S17。黄色模块中基因的显著富集KEGG通路分析结果。
表S18。黄色模块中的核心基因（Hub genes）信息。
表S19。针对黄色模块核心基因的显著富集GO条目结果。
表S20。随机选取基因的定量引物序列的具体信息。