Additional file 16: of Refining a steroidogenic model: an analysis of RNA-seq datasets from insect prothoracic glands

Table S15. Tabulation of 1894 gene models, using the nomenclature of KAIKObase ( http://sgp.dna.affrc.go.jp/KAIKObase/ ), whose Drosophila melanogaster orthologues had an obvious phenotype (column AT) when silenced by RG-specific RNAi. Data from [32] was used to identify the Bm orthologues of Dm genes using OrthoDB [107]. The Bm orthologues were then annotated with our LC-MS/MS data [28] (column F to R), our Bowtie2 data [27] (column S to Z), our Cufflinks data (column AA to AN), and the phenotypic data [32] (column AQ to AT). Data from this table is presented in Fig. 2f. (XLSX 1346 kb)

补充表S15。1894个基因模型的制表列表，采用KAIKObase（http://sgp.dna.affrc.go.jp/KAIKObase/）的命名规范，其中各基因模型对应的黑腹果蝇（Drosophila melanogaster）直向同源基因经RG特异性RNA干扰（RNAi）沉默后呈现显著表型（对应列AT）。本研究借助直向同源数据库（OrthoDB）[107]，依据文献[32]的数据鉴定出果蝇基因的家蚕（Bm）直向同源基因。随后利用本研究的液相色谱-串联质谱（LC-MS/MS）数据[28]（列F至R）、Bowtie2比对数据[27]（列S至Z）、Cufflinks转录组分析数据（列AA至AN）以及文献[32]的表型数据（列AQ至AT）对上述家蚕直向同源基因进行注释。该表所含数据已在图2f中展示。（XLSX格式，文件大小1346 KB）