Data for: Diatom genes originating from red and green algae: implications for the secondary endosymbiosis models

A dataset used for establishing whether diatom genes are closer to red algae or green ones. Based on genomes of P. tricornutum, Th. pseudonana, S. acus subsp. radians, F. solaris, F. cylindrus and P.-n. multiseries, as well as all available diatom transcriptomes from MMETSP. The dataset includes ML and UPGMA trees, Likelihood mapping raw data, alignments used for the above and the results of DIAMOND search of diatom predicted proteins against NCBI nr.

本数据集用于判定硅藻基因与红藻、绿藻的亲缘关系远近。本数据集基于三角褐指藻（P. tricornutum）、假微型海链藻（Th. pseudonana）、尖刺骨条藻辐射亚种（S. acus subsp. radians）、太阳脆杆藻（F. solaris）、圆柱脆杆藻（F. cylindrus）以及多列拟菱形藻（P.-n. multiseries）的基因组序列，同时纳入了MMETSP数据库中所有公开可获取的硅藻转录组数据。该数据集包含最大似然法（Maximum Likelihood，ML）与非加权组平均法（Unweighted Pair Group Method with Arithmetic Mean，UPGMA）构建的系统发育树、似然映射原始数据、用于上述分析的序列比对文件，以及利用DIAMOND工具将硅藻预测蛋白与NCBI非冗余蛋白数据库（NCBI nr）进行比对的结果。