Additional file 4 of The venom and telopodal defence systems of the centipede Lithobius forficatus are functionally convergent serial homologues
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Additional file 4. Excel table summarizing proteotranscriptomic results. First sheet contains results for venom and defensive secretion for the Greifswald and Oslo populations, including contigs names, protein families, presence of signal peptide region, full and predicted mature sequence, secretion containing each protein, and number of high confidence peptide matches (>95 %) in each sample. For the Oslo population, the differential expression results, and corresponding sub-cluster where applicable, are included either for each contig or for the contig retained after clustering nucleotide sequences at 95 % identity. Second sheet includes summary of results used for annotation of Greifswald data in the phylogenetic trees. Third and fourth sheets contain protein summary of the proteomic analyses of the leg proteomes of the anterior and posterior legs, respectively, trimmed to a local predicted false discovery rate < 1 %.
附加文件4:汇总蛋白质转录组学(proteotranscriptomic)结果的Excel表格。第一张工作表涵盖格赖夫斯瓦尔德(Greifswald)与奥斯陆(Oslo)两个种群的毒液及防御分泌物相关分析结果,包括重叠群(contigs)名称、蛋白质家族、信号肽区域存在情况、完整序列与预测成熟序列、各蛋白质所属的分泌物类型,以及每个样本中置信度>95%的肽段匹配数目。针对奥斯陆种群,该工作表还纳入了每个重叠群,或经95%相似度核苷酸序列聚类后保留的重叠群的差异表达结果,以及适用场景下对应的亚簇信息。第二张工作表汇总了用于在系统发育树(phylogenetic trees)中对格赖夫斯瓦尔德数据集进行注释的分析结果。第三、第四张工作表分别包含前足与后足腿部蛋白质组的蛋白质组学分析结果汇总,且已筛选至本地预测错误发现率(false discovery rate)<1%。
创建时间:
2024-06-13



