ALCOdb

Algae Gene Coexpression database provides gene coexpression information to survey gene modules for a function of interest. ALCOdb currently supports two model algae: the green alga Chlamydomonas reinhardtii and the red alga Cyanidioschyzon merolae. Users can retrieve coexpression information for genes of interest through three unique data pages: (i) Coexpressed Gene List; (ii) Gene Information; and (iii) Coexpressed Gene Network. In addition to the basal coexpression information, ALCOdb also provides several advanced functionalities such as an expression profile viewer and a differentially expressed gene search tool.藻类基因共表达数据库（Algae Gene Coexpression database）可提供基因共表达信息，用于解析目标功能相关的基因模块。目前ALCOdb支持两种模式藻类：绿藻莱茵衣藻（Chlamydomonas reinhardtii）与红藻蓝胞藻（Cyanidioschyzon merolae）。用户可通过三个专属数据页面检索目标基因的共表达信息：(i) 共表达基因列表；(ii) 基因信息页面；(iii) 共表达基因网络。除基础共表达信息外，ALCOdb还提供多项高级功能，例如表达谱查看器与差异表达基因检索工具。

搜集汇总

背景与挑战

背景概述

ALCOdb是一个藻类基因共表达数据库，专门提供绿藻Chlamydomonas reinhardtii和红藻Cyanidioschyzon merolae的基因共表达信息。该数据库包含多个数据集，涉及RNA-Seq和微阵列实验，覆盖了不同样本数量和基因条目，例如Cre-R1-15-08包含172个样本和15519个基因，Cme-M1-14-06包含75个样本和4586个基因。