Supplementary data for: A revision of the New Zealand weevil genus Irenimus Pascoe, 1876 (Coleoptera: Curculionidae: Entiminae).

This fileset contains DNA alignments, analysis scripts and Euler/X input files associated with the taxonomic revision "A revision of the New Zealand weevil genus <i>Irenimus</i> Pascoe, 1876 (Coleoptera: Curculionidae: Entiminae)" (Brown SDJ (2017). Zootaxa 4263(1): 1-42. doi: 10.11646/zootaxa.4263.1.1)<br><br><br><b>DNA alignment files in FASTA format:</b><br><i>coi.fasta</i>: 3' end of the cytochrome oxidase I mitochondrial gene (799 bp, 16 sequences)<br><i>coib.fasta</i>: 5' end ("barcoding region") of the cytochrome oxidase I mitochondrial gene (669 bp, 7 sequences)<br><i>28s.fasta</i>: D2-D3 region of 28S ribosomal RNA gene (756 bp, 17 sequences)<br><i>argk.fasta</i>: arginine kinase nuclear gene (715 bp, 17 sequences) <br><i>cad.fasta</i>: CAD nuclear gene (460 bp, 12 sequences)<br><br><b>Analysis scripts:<br></b><i>IrenimusMolecularDiagnostics.R</i>: Script file containing R code for creating the figures in the "Molecular Diagnostics" section of the paper.<b><br><br>Spreadsheet:<br></b><i>IrenimusData.csv</i>: comma separated table containing transcribed label data, georeferenced localities, and morphological data. Fields follow Darwin Core standards for geographic and label data. Morphological data fields are somewhat more idiosyncratic, but were intended to be self-explanatory.<br><br><b>Euler/X taxonomic alignment files:<br></b><i>Broun_Kuschel.txt</i>: Euler/X input file stating the articulations between the concepts of <i>Catoptes</i> sec. Broun and <i>Irenimus</i> sec. Kuschel.<br><i>Broun_Kuschel.pdf</i>: Visualisation of the taxonomic concept alignment resulting from the articulations given in Broun_Kuschel.txt. This is a PDF version of Figure 97 in the paper. <br><i>Broun_Kuschel.svg</i>: Visualisation of the taxonomic concept alignment resulting from the articulations given in Broun_Kuschel.txt. This is a SVG version of Figure 97 in the paper. <br><br><i>Brown_Broun.txt</i>: Euler/X input file stating the articulations between the concepts of <i>Catoptes</i> sec. Broun and <i>Chalepistes</i> sec. Brown.<br><i>Brown_Broun.pdf</i>: Visualisation of the taxonomic concept alignment resulting from the articulations given in Brown_Broun.txt. This is a PDF version of Figure 98 in the paper. <br><i>Brown_Broun.svg</i>: Visualisation of the taxonomic concept alignment resulting from the articulations given in Brown_Broun.txt. This is a SVG version of Figure 98 in the paper. <br><br><i>Kuschel_Brown.txt</i>: Euler/X input file stating the articulations between the concepts of <i>Irenimus</i> sec. Kuschel and <i>Chalepistes</i> sec. Brown.<br><i>Kuschel_Brown.pdf</i>: Visualisation of the taxonomic concept alignment resulting from the articulations given in Kuschel_Brown.txt. This is a PDF version of Figure 99 in the paper. <br><i>Kuschel_Brown.svg</i>: Visualisation of the taxonomic concept alignment resulting from the articulations given in Kuschel_Brown.txt. This is a SVG version of Figure 99 in the paper. <br>

本数据集包含与分类学修订论文《新西兰象鼻虫属<i>Irenimus</i> Pascoe, 1876 分类修订（鞘翅目(Coleoptera):象甲科(Curculionidae):短喙象亚科(Entiminae)）》（Brown SDJ (2017). Zootaxa 4263(1): 1-42. doi: 10.11646/zootaxa.4263.1.1）相关的DNA比对文件、分析脚本及Euler/X(Euler/X)输入文件。

**FASTA格式(FASTA)DNA比对文件：**
<i>coi.fasta</i>：线粒体细胞色素氧化酶I基因3'端序列（799 bp，16条序列）
<i>coib.fasta</i>：线粒体细胞色素氧化酶I基因5'端（"条形码区域"）序列（669 bp，7条序列）
<i>28s.fasta</i>：28S核糖体RNA基因D2-D3区域序列（756 bp，17条序列）
<i>argk.fasta</i>：精氨酸激酶核基因序列（715 bp，17条序列）
<i>cad.fasta</i>：CAD核基因序列（460 bp，12条序列）

**分析脚本：**
<i>IrenimusMolecularDiagnostics.R</i>：用于复现论文"分子诊断"章节图表的R语言脚本文件

**电子表格：**
<i>IrenimusData.csv</i>：逗号分隔值(CSV)表格，包含转录的标签数据、地理定位采样点信息及形态学数据。其中地理与标签数据字段遵循达尔文核心标准(Darwin Core)，形态学数据字段虽相对个性化，但设计初衷为便于使用者自行理解。

**Euler/X分类学比对文件：**
<i>Broun_Kuschel.txt</i>：Euler/X输入文件，阐明了Broun界定的<i>Catoptes</i>类群与Kuschel界定的<i>Irenimus</i>类群两个分类概念之间的对应关系
<i>Broun_Kuschel.pdf</i>：基于<i>Broun_Kuschel.txt</i>中所述对应关系生成的分类学概念比对可视化结果，为论文中图97的PDF版本
<i>Broun_Kuschel.svg</i>：基于<i>Broun_Kuschel.txt</i>中所述对应关系生成的分类学概念比对可视化结果，为论文中图97的SVG版本

<i>Brown_Broun.txt</i>：Euler/X输入文件，阐明了Broun界定的<i>Catoptes</i>类群与Brown界定的<i>Chalepistes</i>类群两个分类概念之间的对应关系
<i>Brown_Broun.pdf</i>：基于<i>Brown_Broun.txt</i>中所述对应关系生成的分类学概念比对可视化结果，为论文中图98的PDF版本
<i>Brown_Broun.svg</i>：基于<i>Brown_Broun.txt</i>中所述对应关系生成的分类学概念比对可视化结果，为论文中图98的SVG版本

<i>Kuschel_Brown.txt</i>：Euler/X输入文件，阐明了Kuschel界定的<i>Irenimus</i>类群与Brown界定的<i>Chalepistes</i>类群两个分类概念之间的对应关系
<i>Kuschel_Brown.pdf</i>：基于<i>Kuschel_Brown.txt</i>中所述对应关系生成的分类学概念比对可视化结果，为论文中图99的PDF版本
<i>Kuschel_Brown.svg</i>：基于<i>Kuschel_Brown.txt</i>中所述对应关系生成的分类学概念比对可视化结果，为论文中图99的SVG版本