Additional file 2 of Multi-omics insights into microbiome-rumen epithelium interaction mechanisms underlying subacute rumen acidosis tolerance in dairy goats

Additional file 2: Table S1 the contribution analysis of functions and microbiota. Table S2 The KEGG pathways enriched by differential genes from HGW-SARA vs HGW-Health goats and HGW-SARA vs HGC-Health goats. Table S3 The number of cells of each type in rumen epithelium in each group of dairy goats. Table S4 The quantity and ratio of basal spinous and granule cells. Table S5 The differential compounds in the rumen between HGW-SARA and LGW-CON goats. Table S6 The correlation between microbiome upregulated in HGW-Health and metabolites related with metabolism. TableS7 The differential compounds participated in Tryptophan metabolism in the rumen of HGW-SARA vs H + S and HGW-SARA vs S + H goats. Table S8 Ingredients and nutrient composition of the low and high-concentrate diet on a dry matter (DM) basis. Table S9 The ingredient list of Reinforced Clostridium Medium (RCM). Table S10 The primers used for relative real-time PCR.

附加文件2：表S1 功能与微生物群贡献分析。表S2 针对HGW-SARA与HGW健康山羊、HGW-SARA与HGC健康山羊的差异基因富集的KEGG（Kyoto Encyclopedia of Genes and Genomes）通路。表S3 各组奶山羊瘤胃上皮各类型细胞数量。表S4 基底细胞、棘细胞与颗粒细胞的数量及占比。表S5 HGW-SARA与LGW-CON山羊瘤胃内的差异化合物。表S6 HGW健康山羊上调微生物群与代谢相关代谢物之间的相关性。表S7 HGW-SARA分别与H+S、S+H山羊瘤胃内参与色氨酸代谢的差异化合物。表S8 以干物质（DM）为基准的低、高浓缩日粮的原料组成与营养成分。表S9 强化梭菌培养基（Reinforced Clostridium Medium, RCM）的成分清单。表S10 相对实时荧光定量PCR所用引物。