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Additional file 17: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

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DataCite Commons2024-12-14 更新2024-07-25 收录
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https://springernature.figshare.com/articles/dataset/Additional_file_17_of_Genome-wide_association_mapping_of_partial_resistance_to_Aphanomyces_euteiches_in_pea/4436648
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Genotyping data of the pea-Aphanomyces collection used for the GWA analysis before filters and imputation. NA: missing data. (a) Morphological gene genotyping data are coded “AA” when phenotypes are white flowers, normal leaves or smooth seeds for A, Af and R genes, respectively, and “BB” when they are colored flowers, afila leaves or wrinkled seeds; (b) PCR specific genotyping data are coded “AA” or “BB” when specific to the first or second allele; (c) SSR genotyping data are presented with the allele size (in bp); (d) SNP genotyping data are coded “AA” or “BB” when homozygous for the first or second allele, “AB” when heterozygous. (XLSX 7252 kb)

本数据集为豌豆-疫霉(pea-Aphanomyces)收集样本的基因分型数据,用于过滤与基因型填充(imputation)前的全基因组关联分析(Genome-Wide Association, GWA)。其中NA代表缺失数据。 (a) 形态基因分型数据编码规则:当表型分别为白花、正常叶或光滑种子时,对应A、Af及R基因的基因型编码为"AA";当表型为有色花、afila叶(afila leaves)或皱缩种子时,编码为"BB"; (b) 特异性PCR基因分型数据:当对应第一或第二等位基因时,分别编码为"AA"或"BB"; (c) 简单序列重复(Simple Sequence Repeat, SSR)基因分型数据以等位基因片段大小(单位为碱基对,bp)表示; (d) 单核苷酸多态性(Single Nucleotide Polymorphism, SNP)基因分型数据编码规则:对应第一或第二等位基因纯合时编码为"AA"或"BB",杂合时编码为"AB"; (XLSX格式,文件大小7252 kb)
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Figshare
创建时间:
2016-12-15
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