Data for "Looks can be deceiving: discordances in phylogeny and morphology within loricate choanoflagellates"

Transcriptome and Predicted ProteinsBEAP0094trimmed_clean.fastaAssembled transcriptome of the BEAP0094 strain.BEAP0094trimmed_clean.fasta.transdecoder.pep.fastaPredicted protein sequences from the BEAP0094 transcriptome using TransDecoder.Hybrid 9-Gene Phylogenyhybrid_9gene.faConcatenated alignment for the 9-gene hybrid phylogeny.input_sequences_hybrid_per_gene.tar.xzInput sequences used for the 9-gene phylogeny, separated by gene.mrbayes_hybrid_tree.txtTree file from MrBayes inference using the hybrid 9-gene alignment.raxml_hybrid_tree.txtTree file from RAxML inference using the hybrid 9-gene alignment.PhyloFisher Phylogenymatrix.fasConcatenated alignment (supermatrix) of selected marker proteins generated with PhyloFisher.phylofisher_iqtree.txtTree file from IQ-TREE analysis of the PhyloFisher supermatrix.input_proteomes_phylofisher.tar.gzAdditional proteomes used in our PhyloFisher analysis, excluding the BEAP0094 proteome and PhyloFisher core proteomes.Supplementsupplementary_file_1.txtSpecies with a 16S/18S detected by phyloFlash or Trinity, used for decontamination.supplementary_video_1.aviTectiform-like division of BEAP0094supplementary_video_2.aviNudiform-like division of BEAP0360

转录组与预测蛋白质组
BEAP0094trimmed_clean.fasta：BEAP0094菌株的组装转录组。
BEAP0094trimmed_clean.fasta.transdecoder.pep.fasta：使用TransDecoder从BEAP0094转录组预测得到的蛋白质序列。
杂交9基因系统发育分析
hybrid_9gene.fa：用于该杂交9基因系统发育分析的串联比对序列。
input_sequences_hybrid_per_gene.tar.xz：用于9基因系统发育分析的输入序列，按基因拆分存储。
mrbayes_hybrid_tree.txt：基于杂交9基因比对序列，通过MrBayes推断得到的系统发育树文件。
raxml_hybrid_tree.txt：基于杂交9基因比对序列，通过RAxML推断得到的系统发育树文件。
PhyloFisher系统发育分析
matrix.fas：使用PhyloFisher生成的选定标记蛋白的串联比对序列（超级矩阵）。
phylofisher_iqtree.txt：基于PhyloFisher超级矩阵，通过IQ-TREE分析得到的系统发育树文件。
input_proteomes_phylofisher.tar.gz：本研究PhyloFisher分析中使用的额外蛋白质组，不含BEAP0094蛋白质组与PhyloFisher核心蛋白质组。
补充材料
supplementary_file_1.txt：通过phyloFlash或Trinity检测到16S/18S序列的物种，用于去污染流程。
supplementary_video_1.avi：BEAP0094的类盖状体分裂过程。
supplementary_video_2.avi：BEAP0360的类裸形体分裂过程。