Stift_et_al_used_R_code

This package contains the R-script used for simulating genetic data of two (or more) populations of a species with multiple ploidy levels. The script is extensively annotated using comments. The script will also perform several clustering analyses on the produced genetic data files. For this, the programs Structure, Admixture, and Instruct should be first downloaded from their respective websites, and placed in the R working directory. The package also contains the parameter files that are used for the Structure analysis; these should also be placed in the working directory.