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资源简介:
R code for analysis of microbiome data
用于微生物组数据(microbiome data)分析的R代码
应用场景:
创建时间:
2023-03-17
相关数据集
gcMeta
全球宏基因组目录(gcMeta)是一个支撑微生物组数据的归档、标准化、分析、检索及可视化展示的综合性数据共享平台。该平台目前收录了超6万个宏基因组测序样本和超50万的宏基因组组装基因组(MAGs),并实现了对样本的梳理归类和对MAG的详细注释、比较筛选与综合分析。
World Data Centre for Microorganisms140
Summary of sequencing runs.
Tabular data given for the number of samples sequenced, OTUs identified and high-quality sequencing reads retained after filtering.
Figshare2017-09-22 更新40
Additional file 5: of Inferring microbial interaction network from microbiome data using RMN algorithm
List of the reliable OTU-triplets ranking by I ( O m , O c , O t ) values in the ascending order. These OTU-triplets were selected when the threshold was set at 0≦L d(O m, O c, O t) ≦3.8 and D(O m, O
Figshare2016-12-15 更新30
IMG/M
IMG/M(Integrated Microbial Genomes & Microbiomes)是一个综合微生物基因组与微生物组数据库,专注于存储、分析和比较微生物基因组数据。该数据库提供快速基因组搜索功能,支持研究人员获取和比较微生物基因组信息。IMG/M由美国能源部联合基因组研究所(JGI)开发和维护。
知名数据库50
Guidelines for describing a microbiome data analysis
Scientific advances in microbial ecology rely on both high-quality data and rigorous analysis. At present, Statistical Analysis sections of many microbiome papers lack essential detail and justificati
NIAID Data Ecosystem30



