遇见数据集

AMPSphere pre-computed resources and auxiliary files for the manuscript codes

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Zenodo2023-03-17 更新2026-05-26 收录
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AMPSphere is a comprehensive catalog of antimicrobial peptides predicted using Macrel (DOI: 10.7717/peerj.10555) from 63,410 public metagenomes, ProGenomes v2.2 database (82,400 high-quality microbial genomes), and c.a. 4k non-whitelisted microbial genomes from NCBI. Currently, AMPSphere is available as a web resource at https://ampsphere.big-data-biology.org/. AMPSphere v.2022-03 contains 863,498 sequences (avg length: 36 amino acids, range 8-98). DRAMP database was used to find confirmed sequences with strict homology to reference. This approach showed that 2,488 peptides were previously confirmed in our dataset. The present repository is a data dump for the precomputed resources and files needed for its generation and analysis as a complement to the GitHub repository. The complementary documentation is also available for each one of the files. To use the files just download them and apply the command `untar` to decompress the folders.

AMPSphere是一套全面的抗菌肽(antimicrobial peptides)目录,其基于Macrel(DOI: 10.7717/peerj.10555),从三类数据源中预测得到:63410条公共宏基因组数据、ProGenomes v2.2数据库(包含82400条高质量微生物基因组),以及约4000条来自美国国家生物技术信息中心(National Center for Biotechnology Information,NCBI)的非白名单微生物基因组。目前,AMPSphere已作为网络资源上线,访问网址为https://ampsphere.big-data-biology.org/。AMPSphere v.2022-03版本共包含863498条序列,平均长度为36个氨基酸,长度区间为8至98个氨基酸。研究团队借助DRAMP数据库,检索与参考序列具有严格同源性的已验证序列,结果显示本数据集中有2488条肽段此前已被证实存在。本仓库为预计算资源及其生成与分析所需文件的数据转储仓库,作为GitHub仓库的补充资源。所有文件均配有专属配套说明文档。使用时仅需下载文件并执行`untar`命令即可解压对应文件夹。

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Zenodo
创建时间:
2023-03-17
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