Additional file 1 of The performance of common SNP arrays in assigning African mitochondrial haplogroups

Additional file 1 Table S1. P-values of comparisons SNP array performances. Table S2. P-values of comparisons SNP array performances (no bootstrapping performed). Fig. S1. Percentage of assignable mitochondrial haplogroups compared to full mitochondrial genome per SNP array (no bootstrapping). Fig. S2. L0-L6 haplogroup assignment performance for eight different SNP arrays (no bootstrapping). Fig. S3. L0-L6 haplogroup assignment performance for eight different SNP arrays (bootstrapping applied). Fig. S4. The percentage of correctly assigned African haplogroups by HaploGrep2, using only SNP array data. Supplementary Section 1. Here, we provide the script used to create VCF files from aligned FASTA files.

附加文件1 表S1：单核苷酸多态性（Single Nucleotide Polymorphism, SNP）芯片性能比较的P值。表S2：未执行自举法检验的SNP芯片性能比较的P值。图S1：未进行自举法检验时，各SNP芯片基于完整线粒体基因组可归类的线粒体单倍群占比。图S2：未进行自举法检验时，8种不同SNP芯片的L0-L6单倍群归类性能。图S3：已应用自举法检验时，8种不同SNP芯片的L0-L6单倍群归类性能。图S4：仅使用SNP芯片数据时，HaploGrep2对非洲人群单倍群的正确归类占比。补充章节1：本节提供了从比对后的FASTA文件生成VCF文件的脚本。