MOESM6 of Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

Additional file 6: Table S5. Non-Oriented Parent-Offspring duos inferred with less than 600 Mendelian Errors (ME), indicating the preferred name of the two individuals of the pair (Preferred Name Ind1, Preferred Name Ind2) and their MUNQ (MUNQ Ind1, MUNQ Ind2, the number of ME (# ME), MUNQ of supposed offspring (Supposed Offspring) and supposed parent (Supposed parent) in the pair when available with indication of the source of the supposed orientation (oriented using), presupposed parents of both individuals (Ind1_Parent1 from Literature, Ind1_Parent 2 from Literature, Ind2_Parent1 from Literature, Ind2_Parent 2 from Literature) and source of these documentation (Source_parents_ind1, Source_parents_ind2), documented dates of ind1 and ind2 as indicated in Additional file 1: Table S1, and indication of possibility of orientation according to date (Date consistency). The duos which were oriented based on documented parentage (ped-lit in column “oriented using”) are listed in the first 44 lines, and are sorted alphabetically according to the preferred name of the supposed offspring. The duos which were oriented based on documented dates of the two individuals are listed in the next 161 lines and are sorted from the oldest to the most recent supposed parent; next are listed the 43 duos which were oriented because one individual of the duos was supposed a child in a duo oriented according to previously documented parentage or dates; these are sorted from the oldest to the most recent supposed parent; next are listed two duos which were oriented in a second round. Next are listed 51 duos for which a date was listed for one individual only: this individual was then attributed to be Ind2 and all these duos are sorted from the oldest to the most recent Ind2. Next are listed seven duos for which a date was available for both individuals but was too imprecise or too old to enable orientation. The remaining 22 duos for which neither dates nor parentage documentation were found, are listed at the end; individuals that appeared most frequently in these duos were attributed to be Ind2 and all these duos are sorted alphabetically according to the preferred name of Ind2.

附加文件6：表S5。该表收录了孟德尔错误（Mendelian Errors, ME）少于600个的无定向亲子对（Non-Oriented Parent-Offspring duos），包含成对个体的推荐名称Ind1（Preferred Name Ind1）、推荐名称Ind2（Preferred Name Ind2）及其MUNQ值（MUNQ Ind1、MUNQ Ind2）、该对的孟德尔错误数（# ME）、推测子代（Supposed Offspring）与推测亲本（Supposed parent）的MUNQ值；若有相关信息，还会附带推测定向依据（oriented using）的说明、两个个体的推定亲本（分别为来自文献的Ind1_Parent1、Ind1_Parent2、Ind2_Parent1、Ind2_Parent2）及其文献来源（Source_parents_ind1、Source_parents_ind2）、如附加文件1表S1所示的Ind1与Ind2的记录日期，以及基于日期的定向可行性说明（Date consistency）。其中，基于已记录亲子关系定向的对（"oriented using"列标注为ped-lit）位列前44行，按推测子代的推荐名称字母顺序排序；基于两个个体已记录日期定向的对共161行，按推测亲本从早到晚排序；随后43个对的定向依据为其中一个个体曾在先前基于已记录亲子关系或日期定向的对中被推定为子代，此类对同样按推测亲本从早到晚排序；之后为2个经第二轮定向的对；接下来51个对仅记录了单个个体的日期，此类对均将该个体指定为Ind2，并按Ind2的时间从早到晚排序；随后7个对的两个个体均有日期记录，但日期过于模糊或久远，无法完成定向；最后22个既无日期记录也无亲子关系佐证的对，其中在这些对中出现频率最高的个体被指定为Ind2，此类对按Ind2的推荐名称字母顺序排序。