Additional annotations on publicly available genomes. This file contains a list of genes identified with the consensus DeNoGAP pipeline on publicly available genomes that were missing from the earlier
FASTA file of all potential open reading frames (ORFs) >=100 amino acids extracted from nucleotide contigs >=1,200 bp assembled from 139,329,276 100 bp pair end (PE) reads from an Illumina HiSeq 2000
The reference genome of E. coli GW-AmxH19 (chromosome CP048647.1, plasmid CP048648.1) was annotated with Prokka v1.14.5 including additional HMM databases: TIGRFAMs v15.0, PGAP v6.0, Pfam35, pVOG v201
ARTS (https://arts3.ziemertlab.com/) version 2.0 annotation of contigs using actinobacteria and alphaproteobacteria reference sets. Phylogeny is not applicable because this is a metagenomic dataset.
