Additional file 7: of Small, but surprisingly repetitive genomes: transposon expansion and not polyploidy has driven a doubling in genome size in a metazoan species complex

File S3. A summary of the repetitive content estimates from each method. “dnaPipeTE_proportions” are the proportional estimates derived from the dnaPipeTE pipeline applied to read libraries, “dnaPipeTE_Mbp_fromprop” reflects these proportional estimates in Mbp (i.e. for each genome, the proportion of each element * the genome size), “dnaPipeTE_Mbp_RM” is the Mbp of each assembly which was masked by RepeatMasker using the dnaPipeTE repetitive element assemblies as repeat libraries, “RepeatModeler_Mbp_RM” when the RepeatModeler libraries were used for masking the assemblies with RepeatMasker, and “RM_metazoa_Mbp” the Mbp of each assembly which were masked with the “metazoa” library of RepeatMasker. (XLSX 16 kb)

文件S3：各方法重复序列含量估算结果汇总。其中，`dnaPipeTE_proportions`为采用dnaPipeTE分析流程处理测序读段文库所得的比例估算值；`dnaPipeTE_Mbp_fromprop`为将上述比例估算值转换为以百万碱基对（Mbp）为单位的数值，即针对每个基因组，各重复元件的占比乘以基因组总大小；`dnaPipeTE_Mbp_RM`指以dnaPipeTE组装的重复元件序列作为重复序列库，通过RepeatMasker对基因组组装序列进行重复序列掩膜后得到的总长度（单位：Mbp）；`RepeatModeler_Mbp_RM`指以RepeatModeler构建的重复序列库作为掩膜参考库，通过RepeatMasker对基因组组装序列进行重复序列掩膜后得到的总长度（单位：Mbp）；`RM_metazoa_Mbp`指使用RepeatMasker的"metazoa"（后生动物）重复序列库对基因组组装序列进行掩膜后得到的总长度（单位：Mbp）。（XLSX 16 kb）