GSE59992_counts_table.txt.gz

Counts table of ATAC-seq peaks. Data is based on Lara-Astasio et al, Science, 2014 and was downloaded from NCBI GEO (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59992). Reads were mapped using bwa version 0.7.12-r1039. Duplicates were marked using bamUtil version 1.02. Peaks were called using MACS2 2.1.0.20140616 with default parameters. Peaks were merged to create a non-redundant peak set and centered at the summit of the highest peak. <br>

ATAC-seq（转座酶可及性染色质测序）峰计数表。本数据集基于Lara-Astasio等人2014年发表于《Science》的研究成果，从美国国家生物技术信息中心（National Center for Biotechnology Information, NCBI）的基因表达综合数据库（Gene Expression Omnibus, GEO，https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59992）下载获取。测序读段使用bwa版本0.7.12-r1039进行序列比对，利用bamUtil版本1.02标记PCR重复序列，采用MACS2 2.1.0.20140616的默认参数进行染色质开放峰识别。将所有识别得到的峰合并以构建非冗余峰集，并以该峰集中最高峰的峰顶作为所有峰的中心位点。