BRAKER3 gene annotations for Apis andreniformis and Apis florea

This dataset contains the gene annotations generated using BRAKER3 for high-quality de novo genome assemblies of Apis andreniformis (black dwarf honey bee) and Apis florea (red dwarf honey bee). The annotation was performed using a combination of RNA-seq data (long- and short-read) and protein homology evidence. Files included: Apis andreniformis A_andreniformis_braker.gtf – Gene annotation file with exon-intron structures. A_andreniformis_braker.aa – Predicted protein sequences (n=16,479). A_andreniformis_braker.codingseq – Predicted coding sequences (n=16,479). A_andreniformis_braker_longest_isoform_only.aa – Predicted protein sequences with only the longest isoform per gene (n=12,189). Apis florea A_florea_braker.gtf – Gene annotation file with exon-intron structures. A_florea_braker.aa – Predicted protein sequences (n=16,511). A_florea_braker.codingseq – Predicted coding sequences (n=16,511). A_florea_braker_longest_isoform_only.aa – Predicted protein sequences with only the longest isoform per gene (n= 12,207). These annotations are provided as a resource for comparative and functional genomics studies of the Micrapis honey bee subgenus. The associated genome assemblies are available on NCBI GenBank under accession numbers JBLZQI000000000.1 (Apis andreniformis) and JBLZQJ000000000.1 (Apis florea). All raw sequencing data used for genome and transcriptome sequencing are available on the NCBI Sequence Read Archive (www.ncbi.nlm.nih.gov/sra) under the following BioProjects:Apis andreniformis1. Genome sequencing and assembly; NCBI BioProject PRJNA12170362. Transcriptome sequencing; NCBI BioProject PRJNA1217108Apis florea1. Genome sequencing and assembly; NCBI BioProject PRJNA12170412. Transcriptome sequencing; NCBI BioProject PRJNA1217110本数据集包含使用BRAKER3对黑小蜜蜂（Apis andreniformis）与红小蜜蜂（Apis florea）的高质量从头组装基因组所生成的基因注释结果。该注释结合了RNA-seq数据（长读长与短读长）以及蛋白质同源性证据完成。 包含的文件如下： ### 黑小蜜蜂（Apis andreniformis） A_andreniformis_braker.gtf：包含外显子-内含子结构的基因注释文件 A_andreniformis_braker.aa：预测的蛋白质序列（共16479条） A_andreniformis_braker.codingseq：预测的编码序列（共16479条） A_andreniformis_braker_longest_isoform_only.aa：仅保留每个基因最长转录本的预测蛋白质序列（共12189条） ### 红小蜜蜂（Apis florea） A_florea_braker.gtf：包含外显子-内含子结构的基因注释文件 A_florea_braker.aa：预测的蛋白质序列（共16511条） A_florea_braker.codingseq：预测的编码序列（共16511条） A_florea_braker_longest_isoform_only.aa：仅保留每个基因最长转录本的预测蛋白质序列（共12207条） 本数据集所提供的注释可作为小蜜蜂亚属（Micrapis）蜜蜂蜜比较基因组学与功能基因组学研究的资源。相关的基因组组装结果已上传至NCBI GenBank数据库，登录号分别为：黑小蜜蜂JBLZQI000000000.1，红小蜜蜂JBLZQJ000000000.1。 所有用于基因组与转录组测序的原始测序数据已上传至NCBI序列读取归档库（NCBI Sequence Read Archive，网址：www.ncbi.nlm.nih.gov/sra），对应的BioProjects如下： 黑小蜜蜂（Apis andreniformis）： 1. 基因组测序与组装；NCBI BioProject编号PRJNA1217036 2. 转录组测序；NCBI BioProject编号PRJNA1217108 红小蜜蜂（Apis florea）： 1. 基因组测序与组装；NCBI BioProject编号PRJNA1217041 2. 转录组测序；NCBI BioProject编号PRJNA1217110