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Blast Descriptions for contigs from Heteromys desmarestianus kidney transcriptome assembly

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DataONE2014-04-18 更新2024-06-27 收录
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These are the preliminary blast descriptions for contigs from the combined assembly of 454 and Illumina reads pooled from 4 individual Heteromys desmarestianus kidney libraries. Descriptions are from a BLASTx search of the Swiss-Prot database at e<1x10^-6. The combined assembly was conducted in gsAssembler version 2.6 and contigs that were smaller than 100 bp have been removed. This accounts for the gaps in contig names (e.g. contig 2 from the gsAssembler asembly was 25 bp long and removed prior to blast annotation so the first two contigs are contig 1 and contig 3).

本数据集为454与Illumina测序读段联合组装所得重叠群(contig)的初步BLAST注释结果,这些测序读段混合自4个独立的Heteromys desmarestianus肾脏文库。该注释结果源自针对Swiss-Prot数据库的BLASTx比对,比对阈值设为e值小于1×10^-6。本次联合组装采用gsAssembler 2.6版本完成,且已移除长度小于100 bp的重叠群。这也解释了重叠群命名存在空缺的原因:例如gsAssembler组装得到的contig 2长度仅为25 bp,在BLAST注释前已被移除,因此前两个有效重叠群为contig 1与contig 3。
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2014-04-18
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