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Additional file 7: of Post-translational buffering leads to convergent protein expression levels between primates

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DataCite Commons2020-08-28 更新2024-07-27 收录
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Transformed ribosome profiling, RNA-seq, and quantitative mass spectrometry data for genes that are quantifiable in all three species across all three data types. A total of six R objects are included in this .RData file. Ribo.expressed.data: TMM normalized log2RPKM values of ribosome profiling data, ribo.expressed.weights: corresponding voom weights for ribosome profiling data, ribo.expressed.ref: TMM normalized log2RPKM values of ribosome profiling data for the reference cell line (GM19238), RNA.expressed.data: TMM normalized log2RPKM values of RNA-seq data, RNA.expressed.weights: corresponding voom weights for RNA-seq data, RNA.expressed.ref: TMM normalized log2RPKM values of RNA-seq data for the reference cell line (GM19238), protein.expressed.data: trimmed mean centered SILAC ratios for quantitative mass spectrometry data. (RDATAÂ 1942Â kb)

本数据集包含可在全部三个物种的三类数据中均实现定量的基因的经转化处理的核糖体谱、RNA测序(RNA-seq)及定量质谱数据。该.RData格式文件中共包含6个R对象,具体如下: Ribo.expressed.data:经TMM(trimmed mean of M-values,修剪均值法)标准化的核糖体谱数据的log₂RPKM值; ribo.expressed.weights:对应核糖体谱数据的voom权重; ribo.expressed.ref:参考细胞系(GM19238)的核糖体谱数据经TMM标准化的log₂RPKM值; RNA.expressed.data:经TMM标准化的RNA测序(RNA-seq)数据的log₂RPKM值; RNA.expressed.weights:对应RNA-seq数据的voom权重; RNA.expressed.ref:参考细胞系(GM19238)的RNA-seq数据经TMM标准化的log₂RPKM值; protein.expressed.data:经修剪均值中心化的SILAC(Stable Isotope Labeling with Amino acids in Cell culture,细胞培养氨基酸稳定同位素标记)定量质谱比值。 本数据集文件大小为1942 KB。
提供机构:
figshare
创建时间:
2018-06-28
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